# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
2f8mA	244	1.01e+00			
1lj2A	110	1.07e+00		h.1.13.2	73926
1hmcA	148	1.75e+00	1hmcB	a.26.1.2	16867
1ib3A	349	2.86e+00	1ib2A		
1umnA	165	2.93e+00		a.25.1.1	99607
1j30A	144	3.11e+00		a.25.1.1	90806
2a7oA	112	3.52e+00			
1hmcB	148	4.05e+00	1hmcB	a.26.1.2	16868
1wdhA	261	4.32e+00			
1zs9A	261	4.32e+00			
1lwdA	413	5.95e+00		c.77.1.1	78265
1ib2A	349	6.60e+00	1ib2A	a.118.1.8	62141
1y01A	102	6.82e+00			
1k47A	337	7.24e+00		d.14.1.5	72040
				d.58.26.4	72041
1hjp	203	7.38e+00	1hjp	a.5.1.1	16274
				a.60.2.1	17947
				b.40.4.2	25266
1v58A	241	9.33e+00		c.47.1.9	108371
				d.17.3.1	108372
1tn6A	382	9.93e+00			
1bxlA	181	1.02e+01	1maz	f.1.4.1	43396
1izoA	417	1.16e+01		a.104.1.1	83851
2lefA	86	1.20e+01	2lefA	a.21.1.1	16433
1jcqA	382	1.25e+01		a.118.6.1	66504
1ld8A	382	1.25e+01		a.118.6.1	73838
1y10A	407	1.25e+01			
1io2A	213	1.25e+01	1ekeA	c.55.3.1	62612
1ks2A	219	1.35e+01		c.124.1.4	72908
				d.58.40.1	72909
1hs6A	611	1.44e+01	1hs6A	a.118.1.7	61233
				b.98.1.1	61234
				d.92.1.13	61235
2al6A	375	1.48e+01			
1siqA	392	1.57e+01		a.29.3.1	105585
				e.6.1.1	105586
1c05A	159	1.57e+01	1c05A	d.66.1.2	39559
1lkzA	219	1.63e+01		c.124.1.4	73991
				d.58.40.1	73992
1upkA	341	1.68e+01		a.118.1.15	99758
1bu2A	229	1.70e+01	1bu2A	a.74.1.1	18360
				a.74.1.1	18361
1x3kA	152	1.75e+01			
1c1yB	77	1.85e+01	1c1yB	d.15.1.5	37618
1ivyA	452	1.88e+01	1ivyA	c.69.1.5	34654
1z77A	200	1.91e+01			
1f7cA	231	1.91e+01	1f7cA	a.116.1.1	19107
1broA	277	1.93e+01	1brt	c.69.1.12	34700
1z67A	135	1.96e+01			
3tmkA	216	1.98e+01	3tmkA	c.37.1.1	31920
1ykfA	352	2.01e+01	1pedA	b.35.1.2	24757
				c.2.1.1	29773
1y9aA	360	2.02e+01			
1cuk	203	2.07e+01	1hjp	a.5.1.1	16273
				a.60.2.1	17946
				b.40.4.2	25265
1g7oA	215	2.25e+01	1g7oA	a.45.1.1	60332
				c.47.1.5	60333
2cpgA	45	2.33e+01	2cpgA	a.43.1.3	17455
1k78A	149	2.34e+01		a.4.1.5	68255
				a.4.1.5	68256
1w0bA	102	2.34e+01		a.7.11.1	108985
2aehA	369	2.34e+01			
1ft1A	377	2.38e+01	1ft1A	a.118.6.1	19186
1rfa	79	2.42e+01	1c1yB	d.15.1.5	37620
1guaB	81	2.67e+01	1c1yB	d.15.1.5	37619
1fjgD	209	2.69e+01	1c05A	d.66.1.2	39553
1hw1A	239	2.76e+01	1e2xA	a.4.5.6	16111
				a.78.1.1	18441
1mq4A	272	2.80e+01		d.144.1.7	91391
1jqnA	883	2.84e+01		c.1.12.3	77159
1tp9A	162	2.91e+01			
1s35A	214	2.92e+01		a.7.1.1	98420
				a.7.1.1	98421
1exnA	290	2.96e+01	1exnA	a.60.7.1	18088
				c.120.1.2	33358
1qb4A	883	2.98e+01		c.1.12.3	74640
1spgA	144	3.00e+01	1abwA	a.1.1.2	15409
2tmkA	216	3.00e+01	3tmkA	c.37.1.1	31928
1upvA	257	3.09e+01			
1fiy	883	3.12e+01	1fiy	c.1.12.3	29307
1a32	88	3.12e+01	1a32	a.16.1.2	16384
1a2zA	220	3.12e+01	1a2zA	c.56.4.1	33794
1za0A	275	3.13e+01			
1brt	277	3.18e+01	1brt	c.69.1.12	34699
1xo1A	291	3.19e+01	1exnA	a.60.7.1	18086
				c.120.1.2	33356
1ug0A	88	3.38e+01		a.217.1.1	107822
1u04A	771	3.55e+01		b.34.14.1	107539
				c.55.3.10	107540
1pq9A	253	3.72e+01		a.123.1.1	95004
1wdaA	670	3.72e+01		b.2.9.1	109243
				b.6.1.6	109244
				d.126.1.5	109245
1ut8A	291	3.79e+01		a.60.7.1	99908
				c.120.1.2	99909
1tbgE	68	3.81e+01	1tbgE	a.137.3.1	19630
1pq1A	196	3.83e+01		f.1.4.1	94986
1t9iA	163	3.84e+01