# List of top-scoring protein chains for t2k-100-30-str hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1e6bA 221 1.89e-01 1e6bA a.45.1.1 59294 c.47.1.5 59295 1lml 478 2.09e+00 1lml d.92.1.3 40295 1vig 71 2.18e+00 1vih d.51.1.1 38806 1vih 71 2.67e+00 1vih d.51.1.1 38807 1cseE 274 3.67e+00 1gci c.41.1.1 32481 1ocrD 147 6.30e+00 1ocrD f.2.1.3 43541 1k1eA 180 7.25e+00 c.108.1.5 67995 1j8dA 180 7.45e+00 c.108.1.5 66433 1qcrG 70 7.87e+00 1be3G f.2.1.8 43677 1pmlA 86 8.46e+00 5hpgA g.14.1.1 44632 5hpgA 84 8.85e+00 5hpgA g.14.1.1 44642 1dfnA 30 9.32e+00 g.9.1.1 44570 1bcg 77 9.99e+00 1aho g.3.7.1 44130 1be3G 81 1.01e+01 1be3G f.2.1.8 43669 1k4wA 252 1.10e+01 a.123.1.1 72068 2occD 147 1.11e+01 1ocrD f.2.1.3 43521 1jmtB 28 1.12e+01 1kg0C 136 1.22e+01 d.169.1.1 72445 1bh6A 274 1.28e+01 1gci c.41.1.1 32487 1k4zA 159 1.34e+01 b.80.5.1 72070 1g1pA 33 1.36e+01 1g1pA g.3.6.1 44099 1smpI 101 1.48e+01 1smpI b.61.2.1 27417 1jpaA 312 1.50e+01 d.144.1.2 67011 1k0mA 241 1.55e+01 a.45.1.1 67949 c.47.1.5 67950 1n3lA 372 1.59e+01 1bgk 37 1.72e+01 1bgk g.19.1.1 44875 1sfe 180 1.96e+01 1sfe a.4.2.1 16073 c.55.7.1 33748 1aw0 72 2.03e+01 1aw0 d.58.17.1 39342 1cmaA 104 2.11e+01 1cmbA a.43.1.2 17486 1h8eI 50 2.14e+01 1e79I a.137.8.1 60758 1jfrA 262 2.17e+01 1jfrA c.69.1.16 34724 1lgyA 269 2.19e+01 3tgl c.69.1.17 34758 1k0nA 241 2.29e+01 a.45.1.1 67953 c.47.1.5 67954 1cmcA 104 2.34e+01 1cmbA a.43.1.2 17462 1cmbA 104 2.35e+01 1cmbA a.43.1.2 17460 1mjoA 104 2.36e+01 1cmbA a.43.1.2 17466 1tc3C 51 2.36e+01 1tc3C a.4.1.2 16025 1jihA 531 2.42e+01 e.8.1.5 66740 1ichA 112 2.49e+01 a.77.1.1 71182 1di6A 195 2.55e+01 1di6A c.57.1.1 33863 1k0iA 394 2.67e+01 c.3.1.2 67942 d.16.1.2 67943 1nixA 34 2.69e+01 1gpeA 587 2.76e+01 1gpeA c.3.1.2 30387 d.16.1.4 37951 1qs1A 462 2.79e+01 1qs1A d.166.1.1 42260 d.166.1.1 42261 1g3uA 214 2.87e+01 c.37.1.1 65132 1pnbA 31 3.07e+01 1pnbA a.52.1.3 17828 1pls 113 3.10e+01 1pls b.55.1.1 26965 1qs2A 401 3.31e+01 1qs1A d.166.1.1 42268 d.166.1.1 42269 1tgsI 56 3.33e+01 1tgsI g.15.1.1 44706 1dt4A 73 3.37e+01 1dt4A d.51.1.1 38799 1fadA 99 3.55e+01 1fadA a.77.1.1 18428 1gbs 185 3.60e+01 153l d.2.1.5 36986 1lnqA 336 3.93e+01 c.2.1.9 74049 f.2.1.11 74050 1ft8E 271 3.98e+01 1ft8E d.58.7.2 39216