YDR527W (YDR527W) SGDID:S0002935, Chr IV from 1491097-1492416
| Description | Link to file | Date |
| Inputs |
| Submitted sequence(s) | YDR527W.a2m | 2002 Nov 2 10:23:20 |
| SAM_T02 multiple alignment in a2m format | YDR527W.t2k.a2m.gz | 2002 Nov 2 10:44:46 |
| SAM_T02 multiple alignment in pretty html format | YDR527W.t2k.pa.html | 2002 Nov 2 10:44:48 |
| SAM_T02 target hidden Markov model | YDR527W.t2k-w0.5.mod | 2002 Nov 2 10:44:54 |
| SAM_T02 multiple alignment in sequence logo format | YDR527W.t2k.w0.5-logo.eps | 2002 Nov 12 1:54:39 |
| Secondary Structure Prediction |
| Str structure prediction RDB format | YDR527W.t2k.str.rdb | 2002 Nov 2 10:44:58 |
| Str structure prediction sequence format | YDR527W.t2k.str.seq | 2002 Nov 2 10:44:57 |
| Str structure prediction in sequence logo format | YDR527W.t2k.str-logo.eps | 2002 Nov 2 10:45:00 |
| DSSP EBGHSTL structure prediction RDB format | YDR527W.t2k.dssp-ebghstl.rdb | 2002 Nov 2 10:45:01 |
| DSSP EBGHSTL structure prediction sequence format | YDR527W.t2k.dssp-ebghstl.seq | 2002 Nov 2 10:45:01 |
| DSSP EBGHSTL structure prediction in sequence logo format | YDR527W.t2k.dssp-ebghstl-logo.eps | 2002 Nov 2 10:45:03 |
| Stride EBGHTL structure prediction RDB format | YDR527W.t2k.stride-ebghtl.rdb | 2002 Nov 2 10:45:04 |
| Stride EBGHTL structure prediction sequence format | YDR527W.t2k.stride-ebghtl.seq | 2002 Nov 2 10:45:04 |
| Stride EBGHTL structure prediction in sequence logo format | YDR527W.t2k.stride-ebghtl-logo.eps | 2002 Nov 2 10:45:06 |
| Alpha angle prediction RDB format | YDR527W.t2k.alpha.rdb | 2002 Nov 2 10:45:08 |
| Alpha angle prediction sequence format | YDR527W.t2k.alpha.seq | 2002 Nov 2 10:45:08 |
| Alpha angle prediction in sequence logo format | YDR527W.t2k.alpha-logo.eps | 2002 Nov 2 10:45:12 |
| DSSP 3-value prediction RDB format | YDR527W.t2k.dssp-ehl2.rdb | 2002 Nov 2 10:45:13 |
| DSSP-EHL2 structure prediction CASP format | YDR527W.t2k.dssp-ehl2 | 2002 Nov 2 10:45:13 |
| DSSP 3-value prediction in sequence logo format | YDR527W.t2k.dssp-ehl2-logo.eps | 2002 Nov 2 10:45:15 |
| Target model scores |
| Annotated amino acid single-track target model scores of PDB | YDR527W.t2k-w0.5-scores.html | 2002 Nov 2 10:56:52 |
| Annotated amino acid/100-30-str two-track target model scores | YDR527W.t2k-100-30-str-scores.html | 2002 Nov 12 1:59:45 |
| Annotated amino acid/100-30-dssp-ebghstl two-track target model scores | YDR527W.t2k-100-30-dssp-ebghstl-scores.html | 2002 Nov 12 2:04:52 |
| Annotated amino acid/100-30-stride-ebghtl two-track target model scores | YDR527W.t2k-100-30-stride-ebghtl-scores.html | 2002 Nov 12 2:09:55 |
| Annotated amino acid/100-30-alpha two-track target model scores | YDR527W.t2k-100-30-alpha-scores.html | 2002 Nov 12 2:15:05 |
| Annotated amino acid/100-30-dssp-ehl2 two-track target model scores | YDR527W.t2k-100-30-dssp-ehl2-scores.html | 2002 Nov 12 2:20:07 |
| Template model scores |
| Annotated template model scores | YDR527W.template-lib-scores.html | 2002 Nov 12 2:27:09 |
| Top Hits |
| Best scoring hits from all models | YDR527W.t2k.best-scores.html | 2002 Nov 12 2:27:10 |
| Alignments for Top Hits |
| T02 Many Alignments Summary | YDR527W.t2k.many_alignments.html | 2002 Nov 12 2:27:17 |
| T02 Top Models Summary | YDR527W.t2k.top_reported_alignments.html | 2002 Dec 29 4:53:27 |
| Undertaker (3d) files |
| Script for dssp coloring in rasmol | YDR527W.t2k.dssp-color.rasmol | 2002 Nov 2 10:45:02 |
| Script for stride coloring in rasmol | YDR527W.t2k.stride-color.rasmol | 2002 Nov 2 10:45:05 |
| Script for str coloring in rasmol | YDR527W.t2k.str-color.rasmol | 2002 Nov 2 10:45:00 |
| Script for alpha coloring in rasmol | YDR527W.t2k.alpha-color.rasmol | 2002 Nov 2 10:45:10 |
| Multiple alignment for undertaker templates | YDR527W.t2k-2track-undertaker.a2m | 2002 Dec 29 4:58:47 |
| Undertaker input for top alignments | YDR527W.t2k.undertaker-align.under | 2002 Dec 29 4:58:47 |
| PDB file with models for top alignments | YDR527W.t2k.undertaker-align.pdb.gz | 2002 Dec 29 4:59:38 |
| Fragment list for undertaker (from fragfinder) | YDR527W.t2k.frag.gz | 2002 Nov 2 12:27:10 |
Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001
SAM_T02 web system designed by Rachel Karchin and Kevin Karplus rachelk@soe.ucsc.edu karplus@soe.ucsc.edu