# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gw5B 591 5.44e-01 1pbwA 216 1.30e+00 1pbwA a.116.1.1 19103 1itbB 315 2.36e+00 1itbB b.1.1.4 21720 b.1.1.4 21721 b.1.1.4 21722 1k3eA 156 2.81e+00 d.198.1.1 68103 1fgkA 310 3.61e+00 1fgkA d.144.1.2 41693 1ecfA 504 3.83e+00 1ecfB c.61.1.1 34053 d.153.1.1 41820 1d3vA 323 3.92e+00 1d3vA c.42.1.1 32559 1rlaA 323 4.35e+00 1d3vA c.42.1.1 32561 1g0rA 293 5.61e+00 1g0rA c.68.1.6 34532 1fxoA 293 5.77e+00 1g0rA c.68.1.6 34524 1eg7A 557 6.29e+00 1eg7A c.37.1.10 32241 1l0oC 243 6.63e+00 1l5aA 436 7.20e+00 1lvhA 221 7.24e+00 1g0uI 205 7.38e+00 d.153.1.4 41891 1rypJ 204 7.91e+00 d.153.1.4 41878 1lnh 857 7.99e+00 1yge a.119.1.1 19237 b.12.1.1 23637 1f6fA 199 9.63e+00 1f6fA a.26.1.1 16839 1ei9A 279 1.00e+01 1ei9A c.69.1.13 34713 1fbaA 361 1.08e+01 1fbaA c.1.10.1 29120 1ecfB 504 1.08e+01 1ecfB c.61.1.1 34054 d.153.1.1 41821 1j5sA 463 1.10e+01 1hw1A 239 1.34e+01 1e2xA a.4.5.6 16111 a.78.1.1 18441 1ge9A 184 1.41e+01 1dd5A d.67.3.1 60463 1cqxA 403 1.49e+01 1cqxA a.1.1.2 15635 b.43.4.2 25667 c.25.1.5 31562 1qe3A 489 1.50e+01 2bce c.69.1.1 34630 1edt 271 1.55e+01 2ebn c.1.8.5 28993 1e2xA 243 1.59e+01 1e2xA a.4.5.6 16113 a.78.1.1 18443 1jytA 163 1.61e+01 b.94.1.1 67489 1dqwA 267 1.78e+01 1dqwA c.1.2.3 28551 1j99A 293 1.82e+01 1tafA 68 1.97e+01 1tafA a.22.1.3 16481 1qqfA 277 2.20e+01 1c3d a.102.4.4 18875 1lkvX 232 2.30e+01 1lox 662 2.30e+01 1lox a.119.1.2 19238 b.12.1.1 23638 2kinB 100 2.43e+01 3kinB 1gd9A 389 2.50e+01 c.67.1.1 60454 1tadA 324 2.54e+01 1cipA a.66.1.1 18194 c.37.1.8 32077 1fcdC 174 2.67e+01 1fcdC a.3.1.4 15966 a.3.1.4 15967 1e6yB 433 2.67e+01 1mroB a.89.1.1 18535 d.58.31.2 39453 1gpl 432 2.68e+01 1gpl b.12.1.2 23645 c.69.1.19 34793 1ihp 438 2.86e+01 1ihp c.60.1.3 33993 1gdeA 389 3.08e+01 c.67.1.1 60456 1jplA 171 3.33e+01 a.118.9.2 67027 1pcp 106 3.48e+01 2pspA g.16.1.1 44742 g.16.1.1 44743 1b37A 472 3.55e+01 1b37B c.3.1.2 30389 d.16.1.5 37953 1f3iA 481 3.61e+01 1b7eA c.55.3.4 33679 1gseA 221 3.76e+01 1pgtA a.45.1.1 17667 c.47.1.5 32961 1qjbA 245 3.77e+01 1qjaA a.118.7.1 19202 1fpkA 335 3.85e+01 1frpA e.7.1.1 42930 1f24A 402 3.87e+01 1rom a.104.1.1 18953 1tag 324 3.93e+01 1cipA a.66.1.1 18197 c.37.1.8 32080 1k3lA 221 3.95e+01 1g6aA 271 3.96e+01 1btl e.3.1.1 42704 1dpsA 167 3.97e+01 1dpsA a.25.1.1 16716