# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1vqsA 116 4.07e-01 1rzhM 307 4.26e-01 f.26.1.1 98165 1aijM 307 4.31e-01 6prcM f.26.1.1 43462 1aijS 301 4.77e-01 6prcM f.26.1.1 43465 1vmhA 144 1.43e+00 1qyp 57 1.66e+00 1qyp g.41.3.1 45205 1e5rA 290 1.77e+00 1e5rA b.82.2.4 59276 1fvpA 231 1.97e+00 1nfp c.1.16.2 29556 1ebmA 317 1.99e+00 1ebmA a.96.1.3 18751 d.129.1.2 41300 1lwyA 324 2.04e+00 a.96.1.3 78285 d.129.1.2 78286 1m3qA 317 2.27e+00 a.96.1.3 91184 d.129.1.2 91185 1ko9A 345 2.33e+00 a.96.1.3 68717 d.129.1.2 68718 1h8eD 482 2.59e+00 1skyE a.69.1.1 60747 b.49.1.1 60748 c.37.1.11 60749 1qwoA 442 2.86e+00 c.60.1.2 104620 1e79D 482 3.52e+00 1skyE a.69.1.1 18272 b.49.1.1 26437 c.37.1.11 32317 1xbfA 140 3.73e+00 d.273.1.1 109538 1mk4A 157 4.58e+00 d.108.1.1 84979 1ax0 239 4.95e+00 1led b.29.1.1 24042 1vmfA 145 6.02e+00 2a9uA 144 6.21e+00 1gzcA 239 7.26e+00 b.29.1.1 70803 1cgo 127 7.96e+00 1cpq a.24.3.2 16550 2agcA 162 8.66e+00 1fa8A 135 9.63e+00 1qipA d.32.1.1 38486 1f9zA 135 9.74e+00 1qipA d.32.1.1 38484 1e85A 127 1.11e+01 1bbhA a.24.3.2 16549 1nwaA 203 1.13e+01 d.58.28.1 86295 2ag4A 164 1.19e+01 2mev1 277 1.36e+01 2mev1 1b4eA 323 1.41e+01 1b4kA c.1.10.3 29186 1v9sA 208 1.41e+01 1g13A 162 1.48e+01 1g13A b.95.1.1 60194 1q4uA 151 1.49e+01 d.38.1.5 95828 1wd6A 123 1.60e+01 2ag9A 164 1.73e+01 1vm8A 534 1.76e+01 2fj8A 125 1.77e+01 1ci3M 249 1.80e+01 1hcz b.2.6.1 22480 b.84.2.2 28266 1svq 114 1.97e+01 1svy d.109.1.1 40832 1kk6A 209 2.01e+01 b.81.1.3 68657 2fhpA 187 2.03e+01 1mr7A 209 2.03e+01 b.81.1.3 91430 1pu5A 164 2.18e+01 b.95.1.1 104310 2a8eA 220 2.23e+01 1j9lA 247 2.32e+01 c.106.1.1 62762 1j9jA 247 2.37e+01 c.106.1.1 62758 1dbtA 239 2.40e+01 1dbtA c.1.2.3 28539 1vejA 74 2.43e+01 1qcxA 359 2.44e+01 1qcxA b.80.1.2 28028 1y8cA 246 2.52e+01 1c2aA 120 2.57e+01 1c2aA g.3.13.1 44349 g.3.13.1 44350 1tetH 210 2.74e+01 1igtB b.1.1.1 19903 b.1.1.2 20997 1a4fB 146 3.01e+01 1abwA a.1.1.2 15573 1gr0A 367 3.10e+01 c.2.1.3 70379 d.81.1.3 70380 1j5jA 36 3.15e+01 g.3.7.2 77082 1eq3A 96 3.24e+01 1eq3A d.26.1.1 59486 1rjcA 137 3.24e+01 1svr 114 3.51e+01 1svy d.109.1.1 40833 1qwdA 177 3.52e+01 b.60.1.1 96471 1skyE 473 3.63e+01 1skyE a.69.1.1 18314 b.49.1.1 26479 c.37.1.11 32359 1ezwA 349 3.75e+01 1ezwA c.1.16.3 29558 1vdmA 153 3.94e+01 1flzA 228 3.95e+01 3eugA c.18.1.1 31027 1hv2A 99 3.97e+01 d.42.1.1 61287