Best Alignments for YDR031W

To select the top models, SAM_T02 generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1hg4A/YDR031W-1hg4A-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1hg4A/YDR031W-1hg4A-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 5.2788e+009.2818e-01 1lbd a.123.1.1
1ei0A/1hp8-YDR031W-fssp-local-adpstyle5.a2m 1ei0A/1hp8-YDR031W-fssp-local-adpstyle5.al 1.8938e+013.9296e+00 1hp8 j.77.1.1
1kx9A/YDR031W-1kx9A-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1kx9A/YDR031W-1kx9A-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 2.0094e+015.0594e+00 a.118.21.1
1mznA/YDR031W-1mznA-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1mznA/YDR031W-1mznA-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 2.2952e+015.7810e+00 a.123.1.1
1ow5A/YDR031W-1ow5A-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1ow5A/YDR031W-1ow5A-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 2.5723e+011.0937e+01 a.60.1.2
1zs9A/YDR031W-1zs9A-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1zs9A/YDR031W-1zs9A-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 2.6824e+016.7062e+00
2cqqA/YDR031W-2cqqA-local-adpstyle5.a2m 2cqqA/YDR031W-2cqqA-local-adpstyle5.al 2.8637e+012.7996e+01
2madL/2bbkL-YDR031W-fssp-local-adpstyle5.a2m 2madL/2bbkL-YDR031W-fssp-local-adpstyle5.al 3.3416e+018.2482e+00 2bbkL g.21.1.1
1q9hA/YDR031W-1q9hA-global-adpstyle1.a2m 1q9hA/YDR031W-1q9hA-global-adpstyle1.al 3.3505e+013.2381e+00
1mvcA/YDR031W-1mvcA-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1mvcA/YDR031W-1mvcA-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.al 3.4112e+011.3792e+01 a.123.1.1
1w5mA/YDR031W-1w5mA-global-adpstyle1.a2m 1w5mA/YDR031W-1w5mA-global-adpstyle1.al 3.4593e+011.0753e+01

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001