# List of top-scoring protein chains for t2k-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jqaA 370 3.01e+00 e.22.1.2 67085 1jq5A 370 3.01e+00 e.22.1.2 67084 1hg4A 279 3.01e+00 1lbd a.123.1.1 19333 2f2gA 221 3.89e+00 1q4mA 221 3.89e+00 a.132.1.3 95805 1xg5A 279 4.95e+00 1ie9A 259 5.65e+00 1db1A a.123.1.1 62318 1ta9A 450 5.75e+00 2ki5A 366 5.97e+00 1qhiA c.37.1.1 31862 1g5yA 238 6.77e+00 1lbd a.123.1.1 60294 1mznA 240 6.96e+00 a.123.1.1 79704 1mc2A 122 7.17e+00 a.133.1.2 74622 1ux8A 132 7.44e+00 1ow5A 85 7.48e+00 a.60.1.2 93630 1vf1A 229 7.74e+00 1pc6A 146 8.25e+00 d.262.1.1 94430 1mba 147 9.14e+00 2fal a.1.1.2 15149 2fal 147 9.33e+00 2fal a.1.1.2 15150 1mvcA 240 9.47e+00 a.123.1.1 79499 1ug7A 128 9.99e+00 a.24.24.1 107824 1xiuA 230 1.22e+01 1ju2A 536 1.28e+01 c.3.1.2 77169 d.16.1.1 77170 2a19A 175 1.29e+01 1xo5A 183 1.29e+01 1fpzA 212 1.30e+01 1fpzA c.45.1.1 59976 1lbd 282 1.31e+01 1lbd a.123.1.1 19279 1p8cA 145 1.32e+01 a.152.1.2 94354 1e85A 127 1.32e+01 1bbhA a.24.3.2 16549 1xwmA 217 1.33e+01 1z0xA 220 1.36e+01 1z3iX 644 1.36e+01 1cgo 127 1.37e+01 1cpq a.24.3.2 16550 3ygsP 97 1.40e+01 3ygsP a.77.1.3 18435 1vkeA 133 1.42e+01 a.152.1.2 108650 1zs9A 261 1.51e+01 2cro 71 1.63e+01 1r69 a.35.1.2 17038 1kinA 366 1.71e+01 1f5vA 240 1.85e+01 1bkjA d.90.1.1 40255 1jplA 171 2.01e+01 a.118.9.2 67027 1rz4A 226 2.01e+01 a.4.5.53 105131 a.118.1.18 105132 1twfB 1224 2.02e+01 1htjF 210 2.04e+01 1htjF a.91.1.1 61254 1dguA 183 2.09e+01 1dguA a.39.1.5 17333 1kq3A 376 2.48e+01 e.22.1.2 68790 1f8vA 355 2.51e+01 2bbvA b.121.4.4 23329 1dm1A 146 2.56e+01 2fal a.1.1.2 15153 1tq4A 413 2.60e+01 c.37.1.8 107201 1db1A 259 2.68e+01 1db1A a.123.1.1 19329 1zug 71 2.84e+01 1r69 a.35.1.2 17041 1jw9B 249 3.02e+01 c.111.1.1 67377 1dbhA 354 3.03e+01 1awe a.87.1.1 18514 b.55.1.1 26967 1q1lA 401 3.11e+01 d.258.1.1 95591 1fm0D 81 3.21e+01 1fmaD d.15.3.1 37642 1sgmA 191 3.37e+01 a.4.1.9 105537 a.121.1.1 105538 1q3iA 214 3.38e+01 d.220.1.1 104524 1jb0F 164 3.43e+01 1jb0F f.23.16.1 62825 1u59A 287 3.45e+01 d.144.1.7 107681 1v54H 85 3.47e+01 a.51.1.1 100329 1e6yA 569 3.52e+01 1mroA a.89.1.1 18529 d.58.31.2 39447 1yakA 263 3.54e+01 1ci0A 228 3.54e+01 1ci0A b.45.1.1 25750 1rwtA 232 3.57e+01 f.43.1.1 97992 1e6wA 260 3.73e+01 1e6wA c.2.1.2 59326 1poc 134 3.77e+01 1poc a.133.1.1 19513 1mg7A 417 3.82e+01 d.14.1.6 84954 d.58.26.6 84955 1n1fA 159 3.95e+01 a.26.1.3 79803 1fmaD 81 3.96e+01 1fmaD d.15.3.1 37643 1ppa 121 3.96e+01 1poa a.133.1.2 19550