# List of top-scoring protein chains for t2k-100-30-str2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1hg4A 279 8.25e-01 1lbd a.123.1.1 19333 1mznA 240 2.10e+00 a.123.1.1 79704 1ci0A 228 2.52e+00 1ci0A b.45.1.1 25750 1xwmA 217 2.60e+00 1zs9A 261 2.70e+00 1xiuA 230 2.78e+00 1vf1A 229 2.94e+00 1jq5A 370 3.03e+00 e.22.1.2 67084 1jqaA 370 3.03e+00 e.22.1.2 67085 1ow5A 85 3.21e+00 a.60.1.2 93630 1mvcA 240 3.26e+00 a.123.1.1 79499 1g5yA 238 3.77e+00 1lbd a.123.1.1 60294 1z3iX 644 3.88e+00 1q4mA 221 4.26e+00 a.132.1.3 95805 2f2gA 221 4.65e+00 2fal 147 5.01e+00 2fal a.1.1.2 15150 1mba 147 5.29e+00 2fal a.1.1.2 15149 1ie9A 259 5.32e+00 1db1A a.123.1.1 62318 1csn 298 5.69e+00 1csn d.144.1.7 41664 1dguA 183 5.97e+00 1dguA a.39.1.5 17333 1kx9A 112 6.26e+00 a.118.21.1 77602 1p8cA 145 6.36e+00 a.152.1.2 94354 1cb2A 365 7.06e+00 1bvwA c.6.1.1 30661 1vkeA 133 7.21e+00 a.152.1.2 108650 1ta9A 450 7.58e+00 1pc6A 146 7.62e+00 d.262.1.1 94430 1n8vA 112 7.91e+00 a.118.21.1 85457 1rz4A 226 8.31e+00 a.4.5.53 105131 a.118.1.18 105132 1cgo 127 9.70e+00 1cpq a.24.3.2 16550 1e85A 127 9.92e+00 1bbhA a.24.3.2 16549 1v74A 107 1.00e+01 d.243.1.1 100442 2cro 71 1.05e+01 1r69 a.35.1.2 17038 3cbh 365 1.08e+01 1bvwA c.6.1.1 30665 1ux8A 132 1.19e+01 1dkfA 233 1.30e+01 3erdA a.123.1.1 19280 1vz6A 393 1.31e+01 d.154.1.2 108949 1lbd 282 1.34e+01 1lbd a.123.1.1 19279 2bbvA 363 1.35e+01 2bbvA b.121.4.4 23323 1qjwA 365 1.36e+01 1bvwA c.6.1.1 30657 3ygsP 97 1.38e+01 3ygsP a.77.1.3 18435 1f8vA 355 1.44e+01 2bbvA b.121.4.4 23329 1htjF 210 1.45e+01 1htjF a.91.1.1 61254 1db1A 259 1.45e+01 1db1A a.123.1.1 19329 1d9cA 121 1.48e+01 1d9cA a.26.1.3 16901 2a19A 175 1.52e+01 1mtyB 384 1.58e+01 1mtyB a.25.1.2 16740 1mmoB 384 1.61e+01 1mtyB a.25.1.2 16768 1fpzA 212 1.64e+01 1fpzA c.45.1.1 59976 1ju2A 536 1.68e+01 c.3.1.2 77169 d.16.1.1 77170 1tq4A 413 1.71e+01 c.37.1.8 107201 1mc2A 122 1.75e+01 a.133.1.2 74622 1zug 71 2.02e+01 1r69 a.35.1.2 17041 1l9vA 317 2.16e+01 d.13.2.1 73760 d.216.1.1 73761 1tqyB 415 2.27e+01 c.95.1.1 107247 c.95.1.1 107248 1ir21 140 2.29e+01 1gk8I 140 2.30e+01 d.73.1.1 65242 1g3gA 164 2.36e+01 1g6gA b.26.1.2 23918 1n1fA 159 2.42e+01 a.26.1.3 79803 1iyhA 198 2.58e+01 a.45.1.1 83790 c.47.1.5 83791 1jraA 117 2.66e+01 a.24.15.1 67117 2bbvC 363 2.68e+01 2bbvA b.121.4.4 23325 1dm1A 146 2.70e+01 2fal a.1.1.2 15153 1ug7A 128 2.71e+01 a.24.24.1 107824 1xo5A 183 2.73e+01 1kzyC 259 2.76e+01 c.15.1.4 73383 c.15.1.4 73384 1e6yA 569 2.76e+01 1mroA a.89.1.1 18529 d.58.31.2 39447 1kq3A 376 2.79e+01 e.22.1.2 68790 2c12A 439 2.84e+01 1qpcA 279 2.89e+01 1fgkA d.144.1.7 41685 1a88A 275 2.89e+01 1brt c.69.1.12 34707 1jb0F 164 2.97e+01 1jb0F f.23.16.1 62825 1lycA 343 2.98e+01 a.93.1.1 74344 1oaiA 59 3.07e+01 a.5.2.3 81255 1jr8A 117 3.11e+01 a.24.15.1 67115 1sgmA 191 3.19e+01 a.4.1.9 105537 a.121.1.1 105538 1q1lA 401 3.19e+01 d.258.1.1 95591 1g5gA 481 3.22e+01 f.12.1.1 65155 h.3.2.1 65156 1jjfA 268 3.32e+01 c.69.1.2 66765 1twfB 1224 3.43e+01 1hsr 344 3.44e+01 1arv a.93.1.1 18592 1szhA 161 3.48e+01 a.226.1.1 106157 1unlD 208 3.49e+01 3lck 271 3.55e+01 1fmk d.144.1.7 41686 1z0xA 220 3.56e+01 1bbhA 131 3.64e+01 1bbhA a.24.3.2 16546 1bkdS 439 3.67e+01 1bkdS a.117.1.1 19111 1r9dA 787 3.74e+01 c.7.1.1 104865 1lvfA 110 3.79e+01 a.47.2.1 74280 2a9uA 144 3.80e+01 1td6A 306 3.87e+01 1sr9A 644 3.89e+01 a.5.7.1 105960 c.1.10.5 105961 d.270.1.1 105962 1ug0A 88 3.91e+01 a.217.1.1 107822