# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1hg4A 279 1.87e+00 1lbd a.123.1.1 19333 1ow5A 85 2.22e+00 a.60.1.2 93630 1jq5A 370 2.44e+00 e.22.1.2 67084 1jqaA 370 2.46e+00 e.22.1.2 67085 1q3iA 214 4.58e+00 d.220.1.1 104524 1vkeA 133 6.43e+00 a.152.1.2 108650 1mc2A 122 6.61e+00 a.133.1.2 74622 1q4mA 221 7.53e+00 a.132.1.3 95805 1dguA 183 7.76e+00 1dguA a.39.1.5 17333 1ta9A 450 8.44e+00 1p8cA 145 9.34e+00 a.152.1.2 94354 1ie9A 259 9.48e+00 1db1A a.123.1.1 62318 1z3iX 644 1.02e+01 2f2gA 221 1.03e+01 1rz4A 226 1.05e+01 a.4.5.53 105131 a.118.1.18 105132 1xiuA 230 1.06e+01 1v74A 107 1.11e+01 d.243.1.1 100442 1e85A 127 1.20e+01 1bbhA a.24.3.2 16549 1xwmA 217 1.22e+01 1mznA 240 1.23e+01 a.123.1.1 79704 1ju2A 536 1.24e+01 c.3.1.2 77169 d.16.1.1 77170 1vf1A 229 1.25e+01 1cgo 127 1.27e+01 1cpq a.24.3.2 16550 1zs9A 261 1.29e+01 2a19A 175 1.39e+01 1pc6A 146 1.43e+01 d.262.1.1 94430 1htjF 210 1.46e+01 1htjF a.91.1.1 61254 1fpzA 212 1.50e+01 1fpzA c.45.1.1 59976 1z0xA 220 1.64e+01 1mvcA 240 1.69e+01 a.123.1.1 79499 1xg5A 279 1.75e+01 1ir21 140 1.77e+01 1gk8I 140 1.78e+01 d.73.1.1 65242 1jkgB 250 1.83e+01 d.17.4.2 66796 1ci0A 228 1.85e+01 1ci0A b.45.1.1 25750 2cro 71 1.87e+01 1r69 a.35.1.2 17038 1kx9A 112 2.09e+01 a.118.21.1 77602 1naqA 112 2.15e+01 d.58.5.2 91761 1kq3A 376 2.19e+01 e.22.1.2 68790 2bbvA 363 2.22e+01 2bbvA b.121.4.4 23323 1mtyB 384 2.37e+01 1mtyB a.25.1.2 16740 1jn5B 250 2.37e+01 d.17.4.2 66922 1mmoB 384 2.37e+01 1mtyB a.25.1.2 16768 1f8vA 355 2.59e+01 2bbvA b.121.4.4 23329 1g5yA 238 2.59e+01 1lbd a.123.1.1 60294 1w1kA 560 2.74e+01 d.58.32.1 109059 d.145.1.1 109060 1g3gA 164 2.79e+01 1g6gA b.26.1.2 23918 1e8gA 560 2.80e+01 1qltA d.58.32.1 39455 d.145.1.1 41718 1q1lA 401 2.82e+01 d.258.1.1 95591 1tq4A 413 2.85e+01 c.37.1.8 107201 1qltA 560 2.86e+01 1qltA d.58.32.1 39457 d.145.1.1 41720 1n1fA 159 2.87e+01 a.26.1.3 79803 1eysL 280 2.99e+01 6prcL f.26.1.1 43515 2bbvC 363 3.10e+01 2bbvA b.121.4.4 23325 1cb2A 365 3.11e+01 1bvwA c.6.1.1 30661 2a9uA 144 3.17e+01 1t6nA 220 3.32e+01 c.37.1.19 106576 3ygsP 97 3.35e+01 3ygsP a.77.1.3 18435 1gotG 73 3.40e+01 1tbgE a.137.3.1 19629 1zug 71 3.54e+01 1r69 a.35.1.2 17041 1djxA 624 3.58e+01 1djxB a.39.1.7 17342 b.7.1.1 23159 c.1.18.1 29587 1twfB 1224 3.59e+01 1e6yA 569 3.67e+01 1mroA a.89.1.1 18529 d.58.31.2 39447 1a0rG 65 3.77e+01 1tbgE a.137.3.1 19639 1qatB 622 3.78e+01 1djxB a.39.1.7 17355 b.7.1.1 23172 c.1.18.1 29600 1rwtA 232 3.88e+01 f.43.1.1 97992 1ib8A 164 3.91e+01 b.38.2.1 71168 d.52.4.1 71169 1lbd 282 3.93e+01 1lbd a.123.1.1 19279