# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1hg4A 279 1.29e+00 1lbd a.123.1.1 19333 1jq5A 370 2.45e+00 e.22.1.2 67084 1jqaA 370 2.46e+00 e.22.1.2 67085 1ow5A 85 2.64e+00 a.60.1.2 93630 1q4mA 221 3.29e+00 a.132.1.3 95805 1ju2A 536 3.68e+00 c.3.1.2 77169 d.16.1.1 77170 1q3iA 214 4.09e+00 d.220.1.1 104524 1zs9A 261 4.25e+00 1htjF 210 4.50e+00 1htjF a.91.1.1 61254 2f2gA 221 4.53e+00 1ie9A 259 4.68e+00 1db1A a.123.1.1 62318 1tqyB 415 5.40e+00 c.95.1.1 107247 c.95.1.1 107248 1z3iX 644 5.44e+00 1thg 544 6.00e+00 1thg c.69.1.17 34763 1vkeA 133 6.06e+00 a.152.1.2 108650 1xiuA 230 6.60e+00 1p8cA 145 6.81e+00 a.152.1.2 94354 1mznA 240 6.90e+00 a.123.1.1 79704 1vf1A 229 8.08e+00 1mmoB 384 8.33e+00 1mtyB a.25.1.2 16768 1mtyB 384 8.36e+00 1mtyB a.25.1.2 16740 1mba 147 8.58e+00 2fal a.1.1.2 15149 1mvcA 240 8.75e+00 a.123.1.1 79499 1ta9A 450 9.32e+00 1db1A 259 9.40e+00 1db1A a.123.1.1 19329 1xwmA 217 1.04e+01 1fpzA 212 1.08e+01 1fpzA c.45.1.1 59976 1rz4A 226 1.16e+01 a.4.5.53 105131 a.118.1.18 105132 2cro 71 1.22e+01 1r69 a.35.1.2 17038 1dguA 183 1.26e+01 1dguA a.39.1.5 17333 1cgo 127 1.30e+01 1cpq a.24.3.2 16550 1ug7A 128 1.30e+01 a.24.24.1 107824 1e85A 127 1.32e+01 1bbhA a.24.3.2 16549 1f8vA 355 1.34e+01 2bbvA b.121.4.4 23329 1g5yA 238 1.35e+01 1lbd a.123.1.1 60294 2a19A 175 1.39e+01 2fal 147 1.42e+01 2fal a.1.1.2 15150 1jjfA 268 1.49e+01 c.69.1.2 66765 2bbvA 363 1.52e+01 2bbvA b.121.4.4 23323 1tq4A 413 1.60e+01 c.37.1.8 107201 1ux8A 132 1.67e+01 1qpcA 279 1.78e+01 1fgkA d.144.1.7 41685 1zug 71 1.87e+01 1r69 a.35.1.2 17041 3lck 271 1.98e+01 1fmk d.144.1.7 41686 1dmuA 299 2.04e+01 1dmuA c.52.1.4 33294 1pc6A 146 2.06e+01 d.262.1.1 94430 1kx9A 112 2.16e+01 a.118.21.1 77602 1lbd 282 2.32e+01 1lbd a.123.1.1 19279 1mc2A 122 2.42e+01 a.133.1.2 74622 1cb2A 365 2.47e+01 1bvwA c.6.1.1 30661 1g3gA 164 2.48e+01 1g6gA b.26.1.2 23918 2bbvC 363 2.61e+01 2bbvA b.121.4.4 23325 1jplA 171 2.79e+01 a.118.9.2 67027 1oaiA 59 2.86e+01 a.5.2.3 81255 1e6yA 569 2.90e+01 1mroA a.89.1.1 18529 d.58.31.2 39447 2occH 85 2.93e+01 2occH a.51.1.1 17796 1qatB 622 2.98e+01 1djxB a.39.1.7 17355 b.7.1.1 23172 c.1.18.1 29600 1kq3A 376 2.98e+01 e.22.1.2 68790 1gk8I 140 3.05e+01 d.73.1.1 65242 1ir21 140 3.10e+01 1poc 134 3.15e+01 1poc a.133.1.1 19513 1vl6A 388 3.22e+01 c.2.1.7 108724 c.58.1.3 108725 1gotG 73 3.30e+01 1tbgE a.137.3.1 19629 1jkgB 250 3.47e+01 d.17.4.2 66796 1yakA 263 3.56e+01 1a0rG 65 3.57e+01 1tbgE a.137.3.1 19639 3ygsP 97 3.58e+01 3ygsP a.77.1.3 18435 1qjwA 365 3.62e+01 1bvwA c.6.1.1 30657 1l9vA 317 3.66e+01 d.13.2.1 73760 d.216.1.1 73761 1djxA 624 3.71e+01 1djxB a.39.1.7 17342 b.7.1.1 23159 c.1.18.1 29587 1sgmA 191 3.79e+01 a.4.1.9 105537 a.121.1.1 105538 1n1fA 159 3.81e+01 a.26.1.3 79803 1o6yA 299 3.96e+01 d.144.1.7 81106 1c2n 137 3.96e+01 1ycc a.3.1.1 15889