# List of top-scoring protein chains for t2k-100-30-alpha hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1xg5A 279 2.19e+00 1jqaA 370 2.89e+00 e.22.1.2 67085 1jq5A 370 2.92e+00 e.22.1.2 67084 1p8cA 145 2.94e+00 a.152.1.2 94354 1vkeA 133 3.68e+00 a.152.1.2 108650 1hg4A 279 4.34e+00 1lbd a.123.1.1 19333 1fpzA 212 4.79e+00 1fpzA c.45.1.1 59976 1e85A 127 4.86e+00 1bbhA a.24.3.2 16549 1jkgB 250 4.94e+00 d.17.4.2 66796 1mznA 240 5.84e+00 a.123.1.1 79704 1cgo 127 6.01e+00 1cpq a.24.3.2 16550 1jn5B 250 7.40e+00 d.17.4.2 66922 1q4mA 221 7.45e+00 a.132.1.3 95805 1mc2A 122 7.65e+00 a.133.1.2 74622 1ow5A 85 7.80e+00 a.60.1.2 93630 1xiuA 230 8.03e+00 1pc6A 146 8.48e+00 d.262.1.1 94430 1mvcA 240 9.19e+00 a.123.1.1 79499 1ci0A 228 9.67e+00 1ci0A b.45.1.1 25750 1zs9A 261 9.85e+00 1poc 134 1.06e+01 1poc a.133.1.1 19513 2f2gA 221 1.10e+01 1tq4A 413 1.16e+01 c.37.1.8 107201 1q3iA 214 1.27e+01 d.220.1.1 104524 1c3cA 429 1.49e+01 1c3cA a.127.1.1 19425 1vf1A 229 1.50e+01 1g3gA 164 1.52e+01 1g6gA b.26.1.2 23918 3ygsP 97 1.53e+01 3ygsP a.77.1.3 18435 2a19A 175 1.54e+01 1ie9A 259 1.60e+01 1db1A a.123.1.1 62318 1dkfA 233 1.78e+01 3erdA a.123.1.1 19280 1fm0D 81 1.80e+01 1fmaD d.15.3.1 37642 1ta9A 450 1.82e+01 1gk8I 140 1.82e+01 d.73.1.1 65242 1v74A 107 1.85e+01 d.243.1.1 100442 1ju2A 536 1.89e+01 c.3.1.2 77169 d.16.1.1 77170 1kq3A 376 1.89e+01 e.22.1.2 68790 1fmaD 81 1.99e+01 1fmaD d.15.3.1 37643 1i37A 260 2.09e+01 1a28A a.123.1.1 61583 2cro 71 2.13e+01 1r69 a.35.1.2 17038 1e0bA 68 2.18e+01 1e0bA b.34.13.2 37476 1z3iX 644 2.20e+01 1naqA 112 2.28e+01 d.58.5.2 91761 1kq4A 232 2.39e+01 d.207.1.1 68791 1ir21 140 2.40e+01 1ppa 121 2.42e+01 1poa a.133.1.2 19550 1o26A 232 2.44e+01 d.207.1.1 86566 1go5A 69 2.46e+01 a.5.2.3 65410 1ixkA 315 2.51e+01 c.66.1.38 90716 1djxA 624 2.51e+01 1djxB a.39.1.7 17342 b.7.1.1 23159 c.1.18.1 29587 1oaiA 59 2.85e+01 a.5.2.3 81255 2a9uA 144 2.87e+01 1obr 326 2.88e+01 1aye c.56.5.2 33828 1q1lA 401 2.88e+01 d.258.1.1 95591 1g5yA 238 2.93e+01 1lbd a.123.1.1 60294 1mba 147 2.99e+01 2fal a.1.1.2 15149 1rz4A 226 3.03e+01 a.4.5.53 105131 a.118.1.18 105132 1jjfA 268 3.03e+01 c.69.1.2 66765 2fal 147 3.26e+01 2fal a.1.1.2 15150 1iyhA 198 3.26e+01 a.45.1.1 83790 c.47.1.5 83791 1y8qA 346 3.32e+01 1vl6A 388 3.46e+01 c.2.1.7 108724 c.58.1.3 108725 1jxcA 68 3.47e+01 g.3.7.5 77201 1e6yA 569 3.48e+01 1mroA a.89.1.1 18529 d.58.31.2 39447 1i39A 225 3.48e+01 1ekeA c.55.3.1 61585 1is1A 185 3.63e+01 d.67.3.1 83704 1rwtA 232 3.78e+01 f.43.1.1 97992 1s8iA 121 3.84e+01 a.133.1.2 98735 1xo5A 183 3.84e+01 1db1A 259 3.89e+01 1db1A a.123.1.1 19329 1ti6B 274 3.92e+01 b.3.5.1 106976 d.58.1.5 106977 1wn5A 130 3.96e+01 1cb2A 365 3.99e+01 1bvwA c.6.1.1 30661 1djxB 624 4.00e+01 1djxB a.39.1.7 17343 b.7.1.1 23160 c.1.18.1 29588