# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1hg4A 279 9.72e-01 1lbd a.123.1.1 19333 1n8vA 112 3.70e+00 a.118.21.1 85457 1zs9A 261 4.79e+00 1ow5A 85 5.11e+00 a.60.1.2 93630 1wj7A 104 5.12e+00 1h98A 78 5.15e+00 d.58.1.2 65743 1tq4A 413 5.63e+00 c.37.1.8 107201 1autL 114 5.74e+00 1hcgB g.3.11.1 44244 g.3.11.1 44245 1kx9A 112 6.86e+00 a.118.21.1 77602 1qupA 222 7.78e+00 1qupA b.1.8.1 22301 d.58.17.1 39352 1ae7 119 8.12e+00 1poa a.133.1.2 19553 1naqA 112 9.35e+00 d.58.5.2 91761 1hdmB 193 1.01e+01 1hdmB b.1.1.2 21584 d.19.1.1 38158 1qgtA 149 1.01e+01 1qgtA a.62.1.1 18135 1gotG 73 1.07e+01 1tbgE a.137.3.1 19629 1su4A 994 1.13e+01 b.82.7.1 98993 c.108.1.7 98994 d.220.1.1 98995 f.33.1.1 98996 1mznA 240 1.16e+01 a.123.1.1 79704 1ata 62 1.17e+01 1eaiC g.22.1.1 44893 1b9xB 68 1.20e+01 1tbgE a.137.3.1 19638 1a0rG 65 1.28e+01 1tbgE a.137.3.1 19639 1tbgE 68 1.34e+01 1tbgE a.137.3.1 19630 1dkfA 233 1.45e+01 3erdA a.123.1.1 19280 1hcgB 51 1.48e+01 1hcgB g.3.11.1 44231 1n4nA 47 1.52e+01 g.3.7.5 91620 1mvcA 240 1.52e+01 a.123.1.1 79499 1fjsL 52 1.58e+01 1hcgB g.3.11.1 44226 1mkcA 43 1.71e+01 1mkcA g.5.1.2 44384 1lbd 282 1.78e+01 1lbd a.123.1.1 19279 1tsk 35 1.82e+01 1sco g.3.7.2 44160 1jy2O 56 1.87e+01 h.1.8.1 67441 1jy3O 56 1.87e+01 h.1.8.1 67447 1m1jA 491 1.94e+01 h.1.8.1 74369 1s9kD 53 2.24e+01 1iyhA 198 2.30e+01 a.45.1.1 83790 c.47.1.5 83791 1es7B 89 2.31e+01 1es7B g.7.1.3 44465 1qhuA 460 2.47e+01 1qhuA b.66.1.1 27530 b.66.1.1 27531 1xiuA 230 2.52e+01 1k8kA 418 2.65e+01 c.55.1.1 68305 c.55.1.1 68306 1rewC 135 2.66e+01 g.7.1.3 97336 1wspA 84 2.67e+01 1ci6B 63 2.78e+01 1ci6B h.1.3.1 45549 1u5mA 73 2.84e+01 1pc6A 146 2.86e+01 d.262.1.1 94430 1jjvA 206 2.89e+01 c.37.1.1 71698 1gu4A 78 2.96e+01 h.1.3.1 83317 1jthD 77 3.23e+01 h.1.15.1 67273 1fm0D 81 3.30e+01 1fmaD d.15.3.1 37642 1ocyA 198 3.35e+01 d.231.1.1 86817 1f7sA 139 3.38e+01 1cof d.109.1.2 40857 1ulkA 126 3.42e+01 g.3.1.1 99559 g.3.1.1 99560 g.3.1.1 99561 1hkxA 147 3.46e+01 d.17.4.7 83567 1bw5 66 3.55e+01 2hddA a.4.1.1 16003 1eulA 994 3.60e+01 1eulA 1cewI 108 3.65e+01 1cewI d.17.1.2 37999 1a1tA 55 3.66e+01 1a1tA g.40.1.1 45165 1os6A 71 3.68e+01 a.138.1.1 93476 1e85A 127 3.68e+01 1bbhA a.24.3.2 16549 1cmkE 350 3.78e+01 1cdkA d.144.1.7 41623 1tsp 559 3.78e+01 1tyv b.80.1.6 28044 1agg 48 3.82e+01 1agg g.3.6.2 44102 1tyv 542 3.88e+01 1tyv b.80.1.6 28038 1r5qA 102 3.91e+01 a.186.1.1 97103 1qa1A 554 3.93e+01 1tyv b.80.1.6 28047 1ocsA 162 3.98e+01 d.189.1.1 92776