%  SAM: /projects/compbio/bin/i686/hmmscore v3.5 (July 15, 2005) compiled 07/18/05_14:54:13
%  (c) 1992-2001 Regents of the University of California, Santa Cruz
%
%          Sequence Alignment and Modeling Software System
%         http://www.cse.ucsc.edu/research/compbio/sam.html
%
% ----------------- Citations (SAM, SAM-T2K, HMMs) --------------------
% R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
%  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
% K. Karplus, et al., What is the value added by human intervention in protein
%  structure prediction, Proteins: Stucture, Function, Genetics 45(S5):86--91, 2001.
% A. Krogh et al., Hidden Markov models in computational biology:
%  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
% ---------------------------------------------------------------------
%  YDR019C.t2k-100-30-alpha   Host: farm06    Mon Nov 21 23:37:56 2005
%  karplus                    Dir:  /projects/compbiousr/compbio0404/experiments/protein-predict/yeast/YDR0/YDR019C
% ---------------------------------------------------------------------
% Inserted Files: 
% Database Files:  /projects/compbio/experiments/models.97/indexes/t2k.x-seqs,/projects/compbio/experiments/models.97/indexes/t2k.alphas
%

MODLIBMOD YDR019C.t2k-100-30-alpha YDR019C.t2k-100-30-alpha model number 1
% Calibration data for 13086 database sequences
% 2264 of 13086 scores > calibrate_threshold (0) used.
trackmod YDR019C.t2k-w0.5.mod,YDR019C.t2k.alpha.mod
trackcoeff 1.0,0.3
alphabet protein,ALPHA
lambda 2.253063
tau 0.734318
sw 2
dpstyle 0
jumpinprob 1.000000
jumpoutprob 1.000000
subtractnull 4
FIMmethodscore -6
insertmethodscore 0
adjust_score 2
ENDMODLIBMOD