# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1wosA 364 1.10e-48 b.44.2.1 109468 d.250.1.1 109469 1wsrA 375 6.50e-47 1vloA 381 2.51e-46 b.44.2.1 108838 d.250.1.1 108839 1v5vA 401 1.03e-45 1pj5A 830 2.45e-41 b.44.2.1 94742 c.3.1.2 94743 d.16.1.5 94744 d.250.1.1 94745 1vlyA 338 9.28e-17 b.44.2.1 108871 d.250.1.1 108872 1nrkA 328 2.15e-16 b.44.2.1 92089 d.250.1.1 92090 1x31C 206 2.39e-06 1xzpB 150 6.22e-01 1i6wA 181 1.19e+00 1i6wA c.69.1.18 61859 1ispA 181 1.23e+00 c.69.1.18 76778 1a3c 181 1.56e+00 1a3c c.61.1.1 34095 1sxrA 183 3.26e+00 d.118.1.1 106101 1nonA 179 4.39e+00 c.61.1.1 103868 1tk9A 188 4.40e+00 c.80.1.3 107082 1fnoA 417 4.82e+00 c.56.5.4 75841 d.58.19.1 70145 1vixA 420 4.87e+00 c.56.5.4 100777 d.58.19.1 100778 1zj8A 566 4.97e+00 1k3fA 253 6.07e+00 c.56.2.1 68105 1jdw 423 6.44e+00 1jdw d.126.1.2 41129 1xznA 179 6.45e+00 2fx2 147 6.56e+00 1rcf c.23.5.1 31158 1o0uA 429 7.32e+00 c.118.1.1 80743 1zfjA 491 7.33e+00 1ak5 c.1.5.1 28638 d.37.1.1 38540 d.37.1.1 38541 1u0mA 382 7.63e+00 c.95.1.2 107557 c.95.1.2 107558 1wf3A 301 7.89e+00 1n40A 396 8.00e+00 a.104.1.1 79977 2fcr 173 8.59e+00 1rcf c.23.5.1 31151 1wyuA 438 9.61e+00 1q8fA 313 9.75e+00 c.70.1.1 96203 1lx7A 253 9.97e+00 c.56.2.1 74329 2b8nA 429 1.00e+01 1tv8A 340 1.04e+01 c.1.28.3 107352 1rxyA 253 1.05e+01 c.56.2.1 98065 1bu5A 147 1.16e+01 5nul c.23.5.1 31155 1nhp 447 1.19e+01 1nhp c.3.1.5 30549 c.3.1.5 30550 d.87.1.1 40196 1nhs 447 1.23e+01 1nhp c.3.1.5 30555 c.3.1.5 30556 d.87.1.1 40199 1bp3B 211 1.23e+01 1axiB b.1.2.1 22031 b.1.2.1 22032 1dkgD 383 1.26e+01 1ba1 c.55.1.1 33427 c.55.1.1 33428 1k8kD 300 1.39e+01 d.198.2.1 68309 d.198.2.1 68310 1f4pA 147 1.40e+01 5nul c.23.5.1 59651 1iq4A 179 1.41e+01 1iq4A d.77.1.1 62641 1vb5A 276 1.42e+01 1mp1A 111 1.45e+01 a.188.1.1 91382 1n9eA 787 1.46e+01 b.30.2.1 91708 d.17.2.1 91709 d.17.2.1 91710 1jnrA 643 1.50e+01 a.7.3.1 66966 c.3.1.4 66967 d.168.1.1 66968 1lvmA 229 1.58e+01 b.47.1.3 78243 2cunA 410 1.61e+01 1tx2A 297 1.69e+01 c.1.21.1 107420 1qx4A 274 1.72e+01 b.43.4.2 104624 c.25.1.1 104625 1wmaA 276 1.76e+01 1rlw 126 1.79e+01 1rlw b.7.1.1 23177 7ahlA 293 1.80e+01 7ahlA f.6.1.1 43812 1joa 447 1.85e+01 1nhp c.3.1.5 30563 c.3.1.5 30564 d.87.1.1 40203 1k66A 149 1.96e+01 c.23.1.1 90941 1v5sA 126 1.98e+01 d.129.6.1 108384 1i3cA 149 1.98e+01 c.23.1.1 71112 1s21A 206 2.05e+01 d.166.1.4 105222 1e0wA 313 2.05e+01 1taxA c.1.8.3 59150 7timA 247 2.15e+01 1amk c.1.1.1 28457 1te0A 318 2.15e+01 1adjA 421 2.24e+01 1adjA c.51.1.1 33188 d.104.1.1 40737 2adoA 196 2.30e+01 1gvhA 396 2.35e+01 a.1.1.2 70601 b.43.4.2 70602 c.25.1.5 70603 1l1jA 239 2.41e+01 b.47.1.1 84516 1pz7A 204 2.41e+01 b.29.1.4 95405 1vbiA 344 2.43e+01 1k68A 140 2.54e+01 c.23.1.1 90943 1rypB 250 2.54e+01 1rypB d.153.1.4 41933 1v0lA 313 2.55e+01 c.1.8.3 108207 1j9eA 147 2.57e+01 c.23.5.1 62756 1fkmA 396 2.62e+01 1fkmA a.69.2.1 18315 a.69.2.1 18316 1a80 277 2.68e+01 1frb c.1.7.1 28700 1x9uA 116 2.70e+01 1c93A 265 2.76e+01 2ebn c.1.8.5 28998 1e9xA 455 2.77e+01 1ea1A a.104.1.1 18969 1jmkC 230 2.84e+01 c.69.1.22 71747 3ullA 132 2.84e+01 3ullA b.40.4.3 25282 1v8gA 329 3.01e+01 a.46.2.1 100505 c.27.1.1 100506 2gbp 309 3.01e+01 1gca c.93.1.1 35657 1odfA 290 3.07e+01 c.37.1.6 92782 1o9lA 481 3.07e+01 c.124.1.3 81242 c.124.1.2 81241 1h5zA 455 3.09e+01 a.104.1.1 90622 1b24A 188 3.11e+01 1b24A d.95.2.1 40573 d.95.2.1 40574 1dqzA 280 3.15e+01 1dqyA c.69.1.3 34638 1y89A 238 3.16e+01 1har 216 3.21e+01 1rthA e.8.1.2 43025 1od8A 313 3.26e+01 c.1.8.3 86838 1zq9A 285 3.28e+01 1dro 122 3.38e+01 1btn b.55.1.1 26954 1l2lA 457 3.44e+01 c.72.1.3 77656 1r2fA 319 3.47e+01 1r2fA a.25.1.2 16800 1y7tA 327 3.53e+01 1no5A 114 3.63e+01 d.218.1.5 92014 2a2lA 145 3.77e+01 1tzvA 142 3.81e+01 a.79.1.1 107526 1sk4A 163 3.82e+01 d.118.1.1 105664 1xrhA 351 3.82e+01 1y81A 138 3.90e+01 1an9A 340 3.96e+01 1an9A c.4.1.2 30617 d.16.1.3 37904 1yiiA 320 3.97e+01