YDR018C (YDR018C) SGDID:S0002425, Chr IV from 482665-483855, reverse complement
| Description | Link to file | Date |
| Inputs |
| Submitted sequence(s) | YDR018C.a2m | 2002 Nov 5 15:16:49 |
| SAM_T02 multiple alignment in a2m format | YDR018C.t2k.a2m.gz | 2002 Nov 5 15:33:19 |
| SAM_T02 multiple alignment in pretty html format | YDR018C.t2k.pa.html | 2002 Nov 5 15:33:21 |
| SAM_T02 target hidden Markov model | YDR018C.t2k-w0.5.mod | 2002 Nov 5 15:33:25 |
| SAM_T02 multiple alignment in sequence logo format | YDR018C.t2k.w0.5-logo.eps | 2002 Nov 11 22:17:14 |
| Secondary Structure Prediction |
| Str structure prediction RDB format | YDR018C.t2k.str.rdb | 2002 Nov 5 15:33:31 |
| Str structure prediction sequence format | YDR018C.t2k.str.seq | 2002 Nov 5 15:33:30 |
| Str structure prediction in sequence logo format | YDR018C.t2k.str-logo.eps | 2002 Nov 5 15:33:34 |
| DSSP EBGHSTL structure prediction RDB format | YDR018C.t2k.dssp-ebghstl.rdb | 2002 Nov 11 22:17:14 |
| DSSP EBGHSTL structure prediction in sequence logo format | YDR018C.t2k.dssp-ebghstl-logo.eps | 2002 Nov 11 22:17:16 |
| Stride EBGHTL structure prediction RDB format | YDR018C.t2k.stride-ebghtl.rdb | 2002 Nov 5 15:33:35 |
| Stride EBGHTL structure prediction sequence format | YDR018C.t2k.stride-ebghtl.seq | 2002 Nov 5 15:33:35 |
| Stride EBGHTL structure prediction in sequence logo format | YDR018C.t2k.stride-ebghtl-logo.eps | 2002 Nov 5 15:33:36 |
| Alpha angle prediction RDB format | YDR018C.t2k.alpha.rdb | 2002 Nov 5 15:33:37 |
| Alpha angle prediction sequence format | YDR018C.t2k.alpha.seq | 2002 Nov 5 15:33:37 |
| Alpha angle prediction in sequence logo format | YDR018C.t2k.alpha-logo.eps | 2002 Nov 5 15:33:39 |
| DSSP 3-value prediction RDB format | YDR018C.t2k.dssp-ehl2.rdb | 2002 Nov 11 22:17:17 |
| DSSP-EHL2 structure prediction CASP format | YDR018C.t2k.dssp-ehl2 | 2002 Nov 11 22:17:17 |
| DSSP 3-value prediction in sequence logo format | YDR018C.t2k.dssp-ehl2-logo.eps | 2002 Nov 11 22:17:17 |
| Target model scores |
| Annotated amino acid single-track target model scores of PDB | YDR018C.t2k-w0.5-scores.html | 2002 Nov 5 15:44:19 |
| Annotated amino acid/100-30-str two-track target model scores | YDR018C.t2k-100-30-str-scores.html | 2002 Nov 11 22:21:57 |
| Annotated amino acid/100-30-dssp-ebghstl two-track target model scores | YDR018C.t2k-100-30-dssp-ebghstl-scores.html | 2002 Nov 11 22:31:18 |
| Annotated amino acid/100-30-stride-ebghtl two-track target model scores | YDR018C.t2k-100-30-stride-ebghtl-scores.html | 2002 Nov 11 22:35:57 |
| Annotated amino acid/100-30-alpha two-track target model scores | YDR018C.t2k-100-30-alpha-scores.html | 2002 Nov 11 22:40:40 |
| Annotated amino acid/100-30-dssp-ehl2 two-track target model scores | YDR018C.t2k-100-30-dssp-ehl2-scores.html | 2002 Nov 11 22:49:54 |
| Template model scores |
| Annotated template model scores | YDR018C.template-lib-scores.html | 2002 Nov 11 22:57:08 |
| Top Hits |
| Best scoring hits from all models | YDR018C.t2k.best-scores.html | 2002 Nov 11 22:57:10 |
| Alignments for Top Hits |
| T02 Many Alignments Summary | YDR018C.t2k.many_alignments.html | 2002 Nov 11 22:57:37 |
| T02 Top Models Summary | YDR018C.t2k.top_reported_alignments.html | 2002 Dec 28 22:53:25 |
| Undertaker (3d) files |
| Script for dssp coloring in rasmol | YDR018C.t2k.dssp-color.rasmol | 2002 Nov 11 22:17:15 |
| Script for stride coloring in rasmol | YDR018C.t2k.stride-color.rasmol | 2002 Nov 5 15:33:36 |
| Script for str coloring in rasmol | YDR018C.t2k.str-color.rasmol | 2002 Nov 5 15:33:33 |
| Script for alpha coloring in rasmol | YDR018C.t2k.alpha-color.rasmol | 2002 Nov 5 15:33:38 |
| Multiple alignment for undertaker templates | YDR018C.t2k-2track-undertaker.a2m | 2002 Dec 28 22:58:12 |
| Undertaker input for top alignments | YDR018C.t2k.undertaker-align.under | 2002 Dec 28 22:58:12 |
| PDB file with models for top alignments | YDR018C.t2k.undertaker-align.pdb.gz | 2002 Dec 28 22:58:57 |
| Fragment list for undertaker (from fragfinder) | YDR018C.t2k.frag.gz | 2002 Nov 5 17:17:33 |
Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001
SAM_T02 web system designed by Rachel Karchin and Kevin Karplus rachelk@soe.ucsc.edu karplus@soe.ucsc.edu