Best Alignments for YDR018C

To select the top models, SAM_T02 generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1k30A/YDR018C-1k30A-local-str-0.3-adpstyle5.a2m 1k30A/YDR018C-1k30A-local-str-0.3-adpstyle5.al 4.2477e-011.4777e-01 c.112.1.1
1fvaA/YDR018C-1fvaA-local-str-0.3-adpstyle5.a2m 1fvaA/YDR018C-1fvaA-local-str-0.3-adpstyle5.al 9.2552e-013.7850e-01 1fvaA d.58.28.1
1f89A/YDR018C-1f89A-local-str-0.3-adpstyle5.a2m 1f89A/YDR018C-1f89A-local-str-0.3-adpstyle5.al 6.2990e+004.9083e+00 d.160.1.1
1i58A/YDR018C-1i58A-local-str-0.3-adpstyle5.a2m 1i58A/YDR018C-1i58A-local-str-0.3-adpstyle5.al 7.7745e+004.1350e+00 1b3qA d.122.1.3
1smaA/1bvzA-YDR018C-fssp-global-adpstyle5.a2m 1smaA/1bvzA-YDR018C-fssp-global-adpstyle5.al 9.4897e+002.1069e+00 1bvzA b.71.1.1
b.1.1.5
c.1.8.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001