Best Alignments for YDR018C

To select the top models, SAM_T02 generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1b3qA/YDR018C-1b3qA-global-str-1.5-adpstyle5.a2m 1.2187e+012.4518e-06 1b3qA b.40.7.1
d.122.1.3
a.30.2.1
1b3qA/YDR018C-1b3qA-local-str-1.5-adpstyle5.a2m 1.2187e+012.1276e-05 1b3qA b.40.7.1
d.122.1.3
a.30.2.1
1k30A/YDR018C-1k30A-global-str-1.5-adpstyle5.a2m 4.2477e-012.7719e-05 c.112.1.1
1k30A/YDR018C-1k30A-local-str-1.5-adpstyle5.a2m 4.2477e-011.2892e-04 c.112.1.1
1fvaA/YDR018C-1fvaA-local-str-1.5-adpstyle5.a2m 9.2552e-011.8461e-02 1fvaA d.58.28.1
1fvaA/YDR018C-1fvaA-global-str-1.5-adpstyle5.a2m 9.2552e-012.8247e-02 1fvaA d.58.28.1
1fvgA/YDR018C-1fvgA-local-str-1.5-adpstyle5.a2m 1.4555e+002.8758e-02 1fvaA d.58.28.1
1k30A/YDR018C-1k30A-global-alpha-0.3-adpstyle5.a2m 4.2477e-014.7561e-02 c.112.1.1
1fvgA/YDR018C-1fvgA-global-str-1.5-adpstyle5.a2m 1.4555e+005.4609e-02 1fvaA d.58.28.1
1k30A/YDR018C-1k30A-global-dssp-ebghstl-0.3-adpstyle5.a2m 4.2477e-016.5248e-02 c.112.1.1
1k30A/YDR018C-1k30A-global-str-0.3-adpstyle5.a2m 4.2477e-016.6332e-02 c.112.1.1
1b3qA/YDR018C-1b3qA-global-str-0.3-adpstyle5.a2m 1.2187e+018.6792e-02 1b3qA b.40.7.1
d.122.1.3
a.30.2.1
1k30A/YDR018C-1k30A-local-alpha-0.3-adpstyle5.a2m 4.2477e-011.0400e-01 c.112.1.1
1b3qA/YDR018C-1b3qA-global-stride-ebghtl-0.3-adpstyle5.a2m 1.2187e+011.1127e-01 1b3qA b.40.7.1
d.122.1.3
a.30.2.1
1k30A/YDR018C-1k30A-global-stride-ebghtl-0.3-adpstyle5.a2m 4.2477e-011.1867e-01 c.112.1.1
1b3qA/YDR018C-1b3qA-global-dssp-ebghstl-0.3-adpstyle5.a2m 1.2187e+011.3478e-01 1b3qA b.40.7.1
d.122.1.3
a.30.2.1
1k30A/YDR018C-1k30A-local-str-0.3-adpstyle5.a2m 4.2477e-011.4777e-01 c.112.1.1
1k30A/YDR018C-1k30A-local-dssp-ebghstl-0.3-adpstyle5.a2m 4.2477e-011.6942e-01 c.112.1.1
1k30A/YDR018C-1k30A-local-stride-ebghtl-0.3-adpstyle5.a2m 4.2477e-011.7040e-01 c.112.1.1
1fvaA/YDR018C-1fvaA-global-dssp-ebghstl-0.3-adpstyle5.a2m 9.2552e-011.9338e-01 1fvaA d.58.28.1
1k30A/YDR018C-1k30A-local-adpstyle1.a2m 4.2477e-012.4516e-01 c.112.1.1
1k30A/YDR018C-1k30A-local-adpstyle5.a2m 4.2477e-012.4516e-01 c.112.1.1
1b3qA/YDR018C-1b3qA-global-alpha-0.3-adpstyle5.a2m 1.2187e+012.6332e-01 1b3qA b.40.7.1
d.122.1.3
a.30.2.1
1fvaA/YDR018C-1fvaA-global-str-0.3-adpstyle5.a2m 9.2552e-013.2515e-01 1fvaA d.58.28.1
1fvgA/YDR018C-1fvgA-global-dssp-ebghstl-0.3-adpstyle5.a2m 1.4555e+003.2724e-01 1fvaA d.58.28.1
1fvaA/YDR018C-1fvaA-local-dssp-ebghstl-0.3-adpstyle5.a2m 9.2552e-013.5424e-01 1fvaA d.58.28.1
1fvaA/YDR018C-1fvaA-local-str-0.3-adpstyle5.a2m 9.2552e-013.7850e-01 1fvaA d.58.28.1
1k30A/YDR018C-1k30A-global-adpstyle5.a2m 4.2477e-014.1283e-01 c.112.1.1
1k30A/YDR018C-1k30A-global-adpstyle1.a2m 4.2477e-014.1283e-01 c.112.1.1
1fvaA/YDR018C-1fvaA-global-alpha-0.3-adpstyle5.a2m 9.2552e-014.7400e-01 1fvaA d.58.28.1
1fvaA/YDR018C-1fvaA-global-stride-ebghtl-0.3-adpstyle5.a2m 9.2552e-015.0797e-01 1fvaA d.58.28.1
1fvaA/YDR018C-1fvaA-local-stride-ebghtl-0.3-adpstyle5.a2m 9.2552e-015.2603e-01 1fvaA d.58.28.1
1fvgA/YDR018C-1fvgA-global-str-0.3-adpstyle5.a2m 1.4555e+005.4809e-01 1fvaA d.58.28.1
1i58A/YDR018C-1i58A-global-str-1.5-adpstyle5.a2m 7.7745e+005.5863e-01 1b3qA d.122.1.3
1k30A/1k30A-YDR018C-global-adpstyle5.a2m 4.2477e-016.0847e-01 c.112.1.1
1k30A/1k30A-YDR018C-global-adpstyle1.a2m 4.2477e-016.0847e-01 c.112.1.1
1fvgA/YDR018C-1fvgA-local-dssp-ebghstl-0.3-adpstyle5.a2m 1.4555e+006.0978e-01 1fvaA d.58.28.1
1fvgA/YDR018C-1fvgA-local-str-0.3-adpstyle5.a2m 1.4555e+006.7281e-01 1fvaA d.58.28.1
1fvgA/YDR018C-1fvgA-global-alpha-0.3-adpstyle5.a2m 1.4555e+006.9665e-01 1fvaA d.58.28.1
1fvgA/YDR018C-1fvgA-global-stride-ebghtl-0.3-adpstyle5.a2m 1.4555e+007.0811e-01 1fvaA d.58.28.1
1fvaA/YDR018C-1fvaA-local-alpha-0.3-adpstyle5.a2m 9.2552e-017.5466e-01 1fvaA d.58.28.1
1fvgA/YDR018C-1fvgA-local-stride-ebghtl-0.3-adpstyle5.a2m 1.4555e+008.3717e-01 1fvaA d.58.28.1
1fvaA/YDR018C-1fvaA-local-adpstyle5.a2m 9.2552e-011.1757e+00 1fvaA d.58.28.1
1fvaA/YDR018C-1fvaA-local-adpstyle1.a2m 9.2552e-011.1757e+00 1fvaA d.58.28.1
1fvgA/YDR018C-1fvgA-local-alpha-0.3-adpstyle5.a2m 1.4555e+001.2920e+00 1fvaA d.58.28.1
1a3aC/YDR018C-1a3aC-global-str-1.5-adpstyle5.a2m 1.4630e+011.4756e+00 1a3aA d.112.1.1
1a3aC/YDR018C-1a3aC-local-str-1.5-adpstyle5.a2m 1.4630e+011.4756e+00 1a3aA d.112.1.1
1i58A/YDR018C-1i58A-local-str-1.5-adpstyle5.a2m 7.7745e+001.6082e+00 1b3qA d.122.1.3
1fvgA/YDR018C-1fvgA-local-adpstyle5.a2m 1.4555e+001.7109e+00 1fvaA d.58.28.1
1fvgA/YDR018C-1fvgA-local-adpstyle1.a2m 1.4555e+001.7109e+00 1fvaA d.58.28.1
1k30A/1k30A-YDR018C-local-adpstyle1.a2m 4.2477e-012.0030e+00 c.112.1.1
1k30A/1k30A-YDR018C-local-adpstyle5.a2m 4.2477e-012.0030e+00 c.112.1.1
1smaA/1bvzA-YDR018C-fssp-global-adpstyle5.a2m 9.4897e+002.1069e+00 1bvzA b.71.1.1
b.1.1.5
c.1.8.1
1k30A/YDR018C-1k30A-simplesw-adpstyle5.a2m 4.2477e-012.1170e+00 c.112.1.1
1k30A/YDR018C-1k30A-simplesw-adpstyle1.a2m 4.2477e-012.1170e+00 c.112.1.1
1smaA/1bvzA-YDR018C-fssp-local-adpstyle5.a2m 9.4897e+002.3607e+00 1bvzA b.71.1.1
b.1.1.5
c.1.8.1
1i58A/1b3qA-YDR018C-fssp-local-adpstyle5.a2m 7.7745e+002.9722e+00 1b3qA d.122.1.3
1fvaA/1fvaA-YDR018C-local-adpstyle5.a2m 9.2552e-013.0302e+00 1fvaA d.58.28.1
1fvaA/1fvaA-YDR018C-local-adpstyle1.a2m 9.2552e-013.0302e+00 1fvaA d.58.28.1
1i58A/1b3qA-YDR018C-fssp-global-adpstyle5.a2m 7.7745e+003.1696e+00 1b3qA d.122.1.3
1f89A/YDR018C-1f89A-local-dssp-ebghstl-0.3-adpstyle5.a2m 6.2990e+003.3239e+00 d.160.1.1
1a3aC/1a3aA-YDR018C-fssp-global-adpstyle5.a2m 1.4630e+013.4043e+00 1a3aA d.112.1.1
1cleA/1thg-YDR018C-fssp-local-adpstyle5.a2m 1.0382e+013.4952e+00 1thg c.69.1.17
1cleA/YDR018C-1cleA-local-str-1.5-adpstyle5.a2m 1.0382e+013.5174e+00 1thg c.69.1.17
1fvaA/YDR018C-1fvaA-global-adpstyle1.a2m 9.2552e-013.5322e+00 1fvaA d.58.28.1
1fvaA/YDR018C-1fvaA-global-adpstyle5.a2m 9.2552e-013.5322e+00 1fvaA d.58.28.1
1fvaA/YDR018C-1fvaA-simplesw-adpstyle1.a2m 9.2552e-013.5343e+00 1fvaA d.58.28.1
1fvaA/YDR018C-1fvaA-simplesw-adpstyle5.a2m 9.2552e-013.5343e+00 1fvaA d.58.28.1
1fvgA/YDR018C-1fvgA-global-adpstyle1.a2m 1.4555e+003.7143e+00 1fvaA d.58.28.1
1fvgA/YDR018C-1fvgA-global-adpstyle5.a2m 1.4555e+003.7143e+00 1fvaA d.58.28.1
1cleA/1thg-YDR018C-fssp-global-adpstyle5.a2m 1.0382e+013.7806e+00 1thg c.69.1.17
1i58A/YDR018C-1i58A-global-str-0.3-adpstyle5.a2m 7.7745e+003.7818e+00 1b3qA d.122.1.3
1a3aC/YDR018C-1a3aC-global-alpha-0.3-adpstyle5.a2m 1.4630e+013.8395e+00 1a3aA d.112.1.1
1i58A/YDR018C-1i58A-local-stride-ebghtl-0.3-adpstyle5.a2m 7.7745e+004.0308e+00 1b3qA d.122.1.3
1fvaA/1fvaA-YDR018C-global-adpstyle1.a2m 9.2552e-014.0584e+00 1fvaA d.58.28.1
1fvaA/1fvaA-YDR018C-global-adpstyle5.a2m 9.2552e-014.0584e+00 1fvaA d.58.28.1
1i58A/YDR018C-1i58A-local-str-0.3-adpstyle5.a2m 7.7745e+004.1350e+00 1b3qA d.122.1.3
1i58A/YDR018C-1i58A-local-dssp-ebghstl-0.3-adpstyle5.a2m 7.7745e+004.1807e+00 1b3qA d.122.1.3
1i58A/YDR018C-1i58A-local-alpha-0.3-adpstyle5.a2m 7.7745e+004.1918e+00 1b3qA d.122.1.3
1b3qA/1b3qA-YDR018C-fssp-local-adpstyle5.a2m 1.2187e+014.3227e+00 1b3qA b.40.7.1
d.122.1.3
a.30.2.1
1a3aC/1a3aA-YDR018C-fssp-local-adpstyle5.a2m 1.4630e+014.4788e+00 1a3aA d.112.1.1
1fvgA/1fvgA-YDR018C-local-adpstyle1.a2m 1.4555e+004.5453e+00 1fvaA d.58.28.1
1fvgA/1fvgA-YDR018C-local-adpstyle5.a2m 1.4555e+004.5453e+00 1fvaA d.58.28.1
1b3qA/1b3qA-YDR018C-fssp-global-adpstyle5.a2m 1.2187e+014.6099e+00 1b3qA b.40.7.1
d.122.1.3
a.30.2.1
1f89A/YDR018C-1f89A-local-stride-ebghtl-0.3-adpstyle5.a2m 6.2990e+004.7443e+00 d.160.1.1
1f89A/YDR018C-1f89A-local-str-0.3-adpstyle5.a2m 6.2990e+004.9083e+00 d.160.1.1
1fvgA/YDR018C-1fvgA-simplesw-adpstyle1.a2m 1.4555e+004.9746e+00 1fvaA d.58.28.1
1fvgA/YDR018C-1fvgA-simplesw-adpstyle5.a2m 1.4555e+004.9746e+00 1fvaA d.58.28.1
1a3aC/YDR018C-1a3aC-global-str-0.3-adpstyle5.a2m 1.4630e+015.2738e+00 1a3aA d.112.1.1
1b3qA/YDR018C-1b3qA-local-str-0.3-adpstyle5.a2m 1.2187e+015.6882e+00 1b3qA b.40.7.1
d.122.1.3
a.30.2.1
1b3qA/YDR018C-1b3qA-local-stride-ebghtl-0.3-adpstyle5.a2m 1.2187e+015.7611e+00 1b3qA b.40.7.1
d.122.1.3
a.30.2.1
1i58A/YDR018C-1i58A-global-alpha-0.3-adpstyle5.a2m 7.7745e+005.7779e+00 1b3qA d.122.1.3
1cleA/YDR018C-1cleA-local-dssp-ebghstl-0.3-adpstyle5.a2m 1.0382e+015.9313e+00 1thg c.69.1.17
1fvgA/1fvgA-YDR018C-global-adpstyle1.a2m 1.4555e+006.0039e+00 1fvaA d.58.28.1
1fvgA/1fvgA-YDR018C-global-adpstyle5.a2m 1.4555e+006.0039e+00 1fvaA d.58.28.1
1a3aC/YDR018C-1a3aC-global-dssp-ebghstl-0.3-adpstyle5.a2m 1.4630e+016.1291e+00 1a3aA d.112.1.1
1f89A/YDR018C-1f89A-local-str-1.5-adpstyle5.a2m 6.2990e+006.3877e+00 d.160.1.1
1b3qA/YDR018C-1b3qA-local-dssp-ebghstl-0.3-adpstyle5.a2m 1.2187e+016.6613e+00 1b3qA b.40.7.1
d.122.1.3
a.30.2.1
1cleA/YDR018C-1cleA-local-str-0.3-adpstyle5.a2m 1.0382e+017.0114e+00 1thg c.69.1.17
1smaA/YDR018C-1smaA-local-adpstyle1.a2m 9.4897e+007.5827e+00 1bvzA b.71.1.1
b.1.1.5
c.1.8.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001