# List of top-scoring protein chains for t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ez0A 510 2.84e+00 1eyyA c.82.1.1 35385 1eyyA 510 2.84e+00 1eyyA c.82.1.1 35389 1h4iB 74 3.19e+00 4aahB a.137.2.1 60587 1sftA 388 3.95e+00 1bd0A b.49.2.1 26482 c.1.6.1 28644 1bd0A 388 3.95e+00 1bd0A b.49.2.1 26480 c.1.6.1 28642 1l6fA 388 3.96e+00 1vcbB 112 5.62e+00 1vcbB d.42.1.1 38633 1g84A 105 6.10e+00 1g84A b.1.1.2 60345 1g7eA 122 6.12e+00 1g7eA c.47.1.7 33055 2fokA 579 6.82e+00 2fokA a.4.5.12 16131 a.4.5.12 16132 a.4.5.12 16133 c.52.1.12 33323 1fokA 568 6.84e+00 2fokA a.4.5.12 16137 a.4.5.12 16138 a.4.5.12 16139 c.52.1.12 33325 1fujA 221 6.88e+00 1a7s b.47.1.2 26349 1k1zA 78 7.14e+00 b.34.2.1 68026 1nsj 205 1.14e+01 1nsj c.1.2.4 28560 4thiA 362 1.18e+01 2thiA c.94.1.1 35793 3thiA 371 1.25e+01 2thiA c.94.1.1 35792 2thiA 379 1.28e+01 2thiA c.94.1.1 35794 1md9A 539 1.36e+01 1i89A 389 1.40e+01 c.95.1.2 66074 c.95.1.2 66075 1mdbA 539 1.52e+01 1et9A 204 1.62e+01 1an8 b.40.2.2 25204 d.15.6.1 37793 4aahB 69 1.65e+01 4aahB a.137.2.1 19625 1g72B 69 1.65e+01 4aahB a.137.2.1 19627 1ospO 257 1.81e+01 1ospO b.76.1.1 27971 1mtyD 512 1.90e+01 1mhyD a.25.1.2 16742 1mmoD 512 1.90e+01 1mhyD a.25.1.2 16770 1fziA 527 1.93e+01 1mhyD a.25.1.2 60140 1jfiB 179 2.11e+01 1jfiB a.22.1.3 62937 1iraY 319 2.14e+01 1itbB b.1.1.4 21717 b.1.1.4 21718 b.1.1.4 21719 1lk0A 131 2.15e+01 1jg5A 83 2.20e+01 d.205.1.1 66666 1is8K 84 2.21e+01 d.205.1.1 66331 1g0yR 312 2.26e+01 1itbB b.1.1.4 21723 b.1.1.4 21724 b.1.1.4 21725 1itbB 315 2.27e+01 1itbB b.1.1.4 21720 b.1.1.4 21721 b.1.1.4 21722 1lvaA 258 2.39e+01 1l7oA 211 2.85e+01 1l7mA 211 2.87e+01 6msi 66 2.96e+01 1msi b.85.1.1 28296 1i8bA 389 3.26e+01 c.95.1.2 66078 c.95.1.2 66079 1fezA 256 3.29e+01 1fezA c.108.1.3 43343 1qo2A 241 3.37e+01 1qo2A c.1.2.1 28533 1f5qB 252 3.41e+01 1f5qB a.74.1.1 18362 a.74.1.1 18363 1f20A 435 3.59e+01 b.43.4.1 64932 c.25.1.4 64933 1g0hA 252 3.59e+01 1dk4A e.7.1.1 60171 1dk4A 252 3.59e+01 1dk4A e.7.1.1 42970 1i88A 389 3.68e+01 c.95.1.2 66070 c.95.1.2 66071 1rhi1 288 3.74e+01 1pov1 1dssG 333 3.89e+01 1dssG c.2.1.3 30022 d.81.1.1 39937 1myo 118 3.89e+01 2myo a.118.2.1 19174 2myo 118 3.89e+01 2myo a.118.2.1 19175