Best Alignments for YCR024C-B

To select the top models, SAM_T02 generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1buiC/2sak-YCR024C-B-fssp-global-adpstyle5.a2m 4.5271e+001.8408e+00 2sak d.15.5.1
1txyA/YCR024C-B-1txyA-global-alpha-0.3-adpstyle5.a2m 8.5189e+001.8650e+00
1buiC/2sak-YCR024C-B-fssp-local-adpstyle5.a2m 4.5271e+001.8751e+00 2sak d.15.5.1
1nziA/YCR024C-B-1nziA-local-str2-1.5-adpstyle5.a2m 1.8627e+012.1381e+00 b.23.1.1
g.3.11.1
1txyA/YCR024C-B-1txyA-global-stride-ebghtl-0.3-adpstyle5.a2m 8.5189e+002.1498e+00
1txyA/YCR024C-B-1txyA-global-dssp-ebghstl-0.3-adpstyle5.a2m 8.5189e+002.6523e+00
1buiC/YCR024C-B-1buiC-global-adpstyle1.a2m 4.5271e+002.8685e+00 2sak d.15.5.1
1buiC/YCR024C-B-1buiC-global-adpstyle5.a2m 4.5271e+002.8685e+00 2sak d.15.5.1
1txyA/YCR024C-B-1txyA-global-adpstyle1.a2m 8.5189e+003.0819e+00
1txyA/YCR024C-B-1txyA-global-adpstyle5.a2m 8.5189e+003.0819e+00
1b8zA/1huuA-YCR024C-B-fssp-local-adpstyle5.a2m 1.2078e+013.1720e+00 1huuA a.55.1.1
1txyA/YCR024C-B-1txyA-global-str2-0.3-adpstyle5.a2m 8.5189e+003.2750e+00
1b8zA/1huuA-YCR024C-B-fssp-global-adpstyle5.a2m 1.2078e+014.1907e+00 1huuA a.55.1.1
1txyA/1txyA-YCR024C-B-global-adpstyle1.a2m 8.5189e+004.4280e+00
1txyA/1txyA-YCR024C-B-global-adpstyle5.a2m 8.5189e+004.4280e+00
1wocA/YCR024C-B-1wocA-global-alpha-0.3-adpstyle5.a2m 1.4973e+014.4558e+00
1v1qA/YCR024C-B-1v1qA-global-alpha-0.3-adpstyle5.a2m 1.6512e+015.2824e+00
2aexA/YCR024C-B-2aexA-global-str2-0.3-adpstyle5.a2m 1.5166e+015.4371e+00
1buiC/YCR024C-B-1buiC-local-adpstyle1.a2m 4.5271e+005.7942e+00 2sak d.15.5.1
1buiC/YCR024C-B-1buiC-local-adpstyle5.a2m 4.5271e+005.7942e+00 2sak d.15.5.1
1buiC/YCR024C-B-1buiC-simplesw-adpstyle1.a2m 4.5271e+006.1516e+00 2sak d.15.5.1
1buiC/YCR024C-B-1buiC-simplesw-adpstyle5.a2m 4.5271e+006.1516e+00 2sak d.15.5.1
1v1qA/YCR024C-B-1v1qA-global-str2-0.3-adpstyle5.a2m 1.6512e+016.1643e+00
1wocA/YCR024C-B-1wocA-global-dssp-ebghstl-0.3-adpstyle5.a2m 1.4973e+016.1866e+00
1v1qA/YCR024C-B-1v1qA-global-dssp-ebghstl-0.3-adpstyle5.a2m 1.6512e+016.1916e+00
1wocA/YCR024C-B-1wocA-global-stride-ebghtl-0.3-adpstyle5.a2m 1.4973e+016.3351e+00
1wocA/YCR024C-B-1wocA-global-str2-0.3-adpstyle5.a2m 1.4973e+016.6508e+00
1nziA/YCR024C-B-1nziA-global-str2-1.5-adpstyle5.a2m 1.8627e+016.7044e+00 b.23.1.1
g.3.11.1
1z2qA/YCR024C-B-1z2qA-global-adpstyle5.a2m 8.8947e+006.8154e+00
1z2qA/YCR024C-B-1z2qA-global-adpstyle1.a2m 8.8947e+006.8154e+00
1v1qA/YCR024C-B-1v1qA-global-adpstyle5.a2m 1.6512e+016.9231e+00
1v1qA/YCR024C-B-1v1qA-global-adpstyle1.a2m 1.6512e+016.9231e+00
1txyA/YCR024C-B-1txyA-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 8.5189e+007.2953e+00
2aexA/YCR024C-B-2aexA-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1.5166e+017.5233e+00
1v1qA/YCR024C-B-1v1qA-global-stride-ebghtl-0.3-adpstyle5.a2m 1.6512e+017.7895e+00
1wocA/YCR024C-B-1wocA-global-adpstyle5.a2m 1.4973e+017.9000e+00
1wocA/YCR024C-B-1wocA-global-adpstyle1.a2m 1.4973e+017.9000e+00
1yxrA/YCR024C-B-1yxrA-global-adpstyle1.a2m 1.1580e+018.0326e+00
1yxrA/YCR024C-B-1yxrA-global-adpstyle5.a2m 1.1580e+018.0326e+00
1nziA/YCR024C-B-1nziA-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1.8627e+018.3394e+00 b.23.1.1
g.3.11.1
1wocA/1wocA-YCR024C-B-global-adpstyle1.a2m 1.4973e+018.5192e+00
1wocA/1wocA-YCR024C-B-global-adpstyle5.a2m 1.4973e+018.5192e+00
1txyA/YCR024C-B-1txyA-local-dssp-ebghstl-0.3-adpstyle5.a2m 8.5189e+009.4919e+00
1txyA/YCR024C-B-1txyA-local-str2-0.3-adpstyle5.a2m 8.5189e+009.6767e+00
1v1qA/1v1qA-YCR024C-B-global-adpstyle1.a2m 1.6512e+011.0148e+01
1v1qA/1v1qA-YCR024C-B-global-adpstyle5.a2m 1.6512e+011.0148e+01
1z2qA/YCR024C-B-1z2qA-simplesw-adpstyle5.a2m 8.8947e+001.1280e+01
1z2qA/YCR024C-B-1z2qA-simplesw-adpstyle1.a2m 8.8947e+001.1280e+01
1txyA/YCR024C-B-1txyA-local-stride-ebghtl-0.3-adpstyle5.a2m 8.5189e+001.1542e+01
1z2qA/YCR024C-B-1z2qA-local-adpstyle1.a2m 8.8947e+001.1705e+01
1z2qA/YCR024C-B-1z2qA-local-adpstyle5.a2m 8.8947e+001.1705e+01
1b8zA/YCR024C-B-1b8zA-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1.2078e+011.1927e+01 1huuA a.55.1.1
2aexA/YCR024C-B-2aexA-local-str2-0.3-adpstyle5.a2m 1.5166e+011.2155e+01
2aexA/YCR024C-B-2aexA-global-str2-1.5-adpstyle5.a2m 1.5166e+011.2550e+01
1wocA/YCR024C-B-1wocA-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1.4973e+011.2871e+01
1nziA/YCR024C-B-1nziA-local-str2-0.3-adpstyle5.a2m 1.8627e+011.3154e+01 b.23.1.1
g.3.11.1
1txyA/YCR024C-B-1txyA-simplesw-adpstyle5.a2m 8.5189e+001.3239e+01
1txyA/YCR024C-B-1txyA-simplesw-adpstyle1.a2m 8.5189e+001.3239e+01
1txyA/YCR024C-B-1txyA-local-adpstyle5.a2m 8.5189e+001.3417e+01
1txyA/YCR024C-B-1txyA-local-adpstyle1.a2m 8.5189e+001.3417e+01
1yxrA/YCR024C-B-1yxrA-simplesw-adpstyle1.a2m 1.1580e+011.3623e+01
1yxrA/YCR024C-B-1yxrA-simplesw-adpstyle5.a2m 1.1580e+011.3623e+01
1b8zA/YCR024C-B-1b8zA-global-dssp-ebghstl-0.3-adpstyle5.a2m 1.2078e+011.3936e+01 1huuA a.55.1.1
1b8zA/YCR024C-B-1b8zA-global-stride-ebghtl-0.3-adpstyle5.a2m 1.2078e+011.4366e+01 1huuA a.55.1.1
1txyA/YCR024C-B-1txyA-local-alpha-0.3-adpstyle5.a2m 8.5189e+001.4391e+01
1v1qA/YCR024C-B-1v1qA-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 1.6512e+011.5188e+01
1yxrA/YCR024C-B-1yxrA-local-adpstyle5.a2m 1.1580e+011.5386e+01
1yxrA/YCR024C-B-1yxrA-local-adpstyle1.a2m 1.1580e+011.5386e+01
1b8zA/YCR024C-B-1b8zA-local-dssp-ebghstl-0.3-adpstyle5.a2m 1.2078e+011.5554e+01 1huuA a.55.1.1
1b8zA/YCR024C-B-1b8zA-global-str2-0.3-adpstyle5.a2m 1.2078e+011.5701e+01 1huuA a.55.1.1
1b8zA/YCR024C-B-1b8zA-global-alpha-0.3-adpstyle5.a2m 1.2078e+011.6191e+01 1huuA a.55.1.1
2aexA/YCR024C-B-2aexA-global-stride-ebghtl-0.3-adpstyle5.a2m 1.5166e+011.6232e+01
1b8zA/1b8zA-YCR024C-B-local-adpstyle5.a2m 1.2078e+011.6507e+01 1huuA a.55.1.1
1b8zA/1b8zA-YCR024C-B-local-adpstyle1.a2m 1.2078e+011.6507e+01 1huuA a.55.1.1
1nziA/YCR024C-B-1nziA-global-str2-0.3-adpstyle5.a2m 1.8627e+011.6564e+01 b.23.1.1
g.3.11.1
1wocA/YCR024C-B-1wocA-local-str2-0.3-adpstyle5.a2m 1.4973e+011.6886e+01
1wocA/YCR024C-B-1wocA-local-dssp-ebghstl-0.3-adpstyle5.a2m 1.4973e+011.7055e+01
1b8zA/YCR024C-B-1b8zA-local-stride-ebghtl-0.3-adpstyle5.a2m 1.2078e+011.7347e+01 1huuA a.55.1.1
1b8zA/YCR024C-B-1b8zA-local-str2-0.3-adpstyle5.a2m 1.2078e+011.7401e+01 1huuA a.55.1.1
1b8zA/YCR024C-B-1b8zA-local-str2-1.5-adpstyle5.a2m 1.2078e+011.7401e+01 1huuA a.55.1.1
2aexA/YCR024C-B-2aexA-global-dssp-ebghstl-0.3-adpstyle5.a2m 1.5166e+011.7589e+01
1v1qA/YCR024C-B-1v1qA-local-dssp-ebghstl-0.3-adpstyle5.a2m 1.6512e+011.8670e+01
1v1qA/YCR024C-B-1v1qA-local-str2-0.3-adpstyle5.a2m 1.6512e+011.8973e+01
2aexA/YCR024C-B-2aexA-local-dssp-ebghstl-0.3-adpstyle5.a2m 1.5166e+011.9702e+01
1txyA/YCR024C-B-1txyA-global-str2-1.5-adpstyle5.a2m 8.5189e+001.9866e+01
1b8zA/YCR024C-B-1b8zA-local-alpha-0.3-adpstyle5.a2m 1.2078e+012.0538e+01 1huuA a.55.1.1
1wocA/YCR024C-B-1wocA-local-stride-ebghtl-0.3-adpstyle5.a2m 1.4973e+012.0649e+01
1txyA/1txyA-YCR024C-B-local-adpstyle1.a2m 8.5189e+002.0923e+01
1txyA/1txyA-YCR024C-B-local-adpstyle5.a2m 8.5189e+002.0923e+01
2cptA/YCR024C-B-2cptA-global-adpstyle1.a2m 2.3524e+012.1057e+01
2cptA/YCR024C-B-2cptA-global-adpstyle5.a2m 2.3524e+012.1057e+01
1wocA/YCR024C-B-1wocA-simplesw-adpstyle5.a2m 1.4973e+012.1152e+01
1wocA/YCR024C-B-1wocA-simplesw-adpstyle1.a2m 1.4973e+012.1152e+01
1b8zA/YCR024C-B-1b8zA-simplesw-adpstyle1.a2m 1.2078e+012.1403e+01 1huuA a.55.1.1
1b8zA/YCR024C-B-1b8zA-simplesw-adpstyle5.a2m 1.2078e+012.1403e+01 1huuA a.55.1.1
1wocA/YCR024C-B-1wocA-local-adpstyle5.a2m 1.4973e+012.1438e+01
1wocA/YCR024C-B-1wocA-local-adpstyle1.a2m 1.4973e+012.1438e+01
2aexA/YCR024C-B-2aexA-global-alpha-0.3-adpstyle5.a2m 1.5166e+012.1640e+01
2aexA/YCR024C-B-2aexA-local-stride-ebghtl-0.3-adpstyle5.a2m 1.5166e+012.1940e+01
1nziA/YCR024C-B-1nziA-global-alpha-0.3-adpstyle5.a2m 1.8627e+012.2017e+01 b.23.1.1
g.3.11.1
1b8zA/1b8zA-YCR024C-B-global-adpstyle5.a2m 1.2078e+012.2130e+01 1huuA a.55.1.1
1b8zA/1b8zA-YCR024C-B-global-adpstyle1.a2m 1.2078e+012.2130e+01 1huuA a.55.1.1
2aexA/YCR024C-B-2aexA-local-alpha-0.3-adpstyle5.a2m 1.5166e+012.2666e+01
1b8zA/YCR024C-B-1b8zA-local-adpstyle5.a2m 1.2078e+012.2761e+01 1huuA a.55.1.1
1b8zA/YCR024C-B-1b8zA-local-adpstyle1.a2m 1.2078e+012.2761e+01 1huuA a.55.1.1
2aexA/YCR024C-B-2aexA-local-str2-1.5-adpstyle5.a2m 1.5166e+012.3388e+01
1wr0A/YCR024C-B-1wr0A-simplesw-adpstyle5.a2m 1.9835e+012.3978e+01
1wr0A/YCR024C-B-1wr0A-simplesw-adpstyle1.a2m 1.9835e+012.3978e+01
1wocA/YCR024C-B-1wocA-local-alpha-0.3-adpstyle5.a2m 1.4973e+012.4379e+01
1v1qA/YCR024C-B-1v1qA-local-stride-ebghtl-0.3-adpstyle5.a2m 1.6512e+012.4449e+01
1v1qA/YCR024C-B-1v1qA-simplesw-adpstyle5.a2m 1.6512e+012.4449e+01
1v1qA/YCR024C-B-1v1qA-simplesw-adpstyle1.a2m 1.6512e+012.4449e+01
1v1qA/YCR024C-B-1v1qA-local-adpstyle1.a2m 1.6512e+012.5044e+01
1v1qA/YCR024C-B-1v1qA-local-adpstyle5.a2m 1.6512e+012.5044e+01
1nziA/YCR024C-B-1nziA-local-alpha-0.3-adpstyle5.a2m 1.8627e+012.5118e+01 b.23.1.1
g.3.11.1
1nziA/YCR024C-B-1nziA-global-dssp-ebghstl-0.3-adpstyle5.a2m 1.8627e+012.5373e+01 b.23.1.1
g.3.11.1
1nziA/YCR024C-B-1nziA-local-dssp-ebghstl-0.3-adpstyle5.a2m 1.8627e+012.5944e+01 b.23.1.1
g.3.11.1
1v1qA/YCR024C-B-1v1qA-local-alpha-0.3-adpstyle5.a2m 1.6512e+012.5971e+01
1nziA/YCR024C-B-1nziA-global-stride-ebghtl-0.3-adpstyle5.a2m 1.8627e+012.6342e+01 b.23.1.1
g.3.11.1
1b8zA/YCR024C-B-1b8zA-global-adpstyle1.a2m 1.2078e+012.6443e+01 1huuA a.55.1.1
1b8zA/YCR024C-B-1b8zA-global-adpstyle5.a2m 1.2078e+012.6443e+01 1huuA a.55.1.1
1wr0A/YCR024C-B-1wr0A-local-adpstyle5.a2m 1.9835e+012.6775e+01
1wr0A/YCR024C-B-1wr0A-local-adpstyle1.a2m 1.9835e+012.6775e+01
2aexA/YCR024C-B-2aexA-simplesw-adpstyle5.a2m 1.5166e+012.7499e+01
2aexA/YCR024C-B-2aexA-simplesw-adpstyle1.a2m 1.5166e+012.7499e+01
1txyA/YCR024C-B-1txyA-local-str2-1.5-adpstyle5.a2m 8.5189e+002.7659e+01
2aexA/YCR024C-B-2aexA-local-adpstyle5.a2m 1.5166e+012.8209e+01
2aexA/YCR024C-B-2aexA-local-adpstyle1.a2m 1.5166e+012.8209e+01
2cptA/YCR024C-B-2cptA-simplesw-adpstyle5.a2m 2.3524e+012.8583e+01
2cptA/YCR024C-B-2cptA-simplesw-adpstyle1.a2m 2.3524e+012.8583e+01
1wr0A/YCR024C-B-1wr0A-global-adpstyle5.a2m 1.9835e+012.8647e+01
1wr0A/YCR024C-B-1wr0A-global-adpstyle1.a2m 1.9835e+012.8647e+01
1v1qA/YCR024C-B-1v1qA-global-str2-1.5-adpstyle5.a2m 1.6512e+012.9500e+01
1m3gA/YCR024C-B-1m3gA-simplesw-adpstyle5.a2m 2.3382e+012.9888e+01 c.45.1.1
1m3gA/YCR024C-B-1m3gA-simplesw-adpstyle1.a2m 2.3382e+012.9888e+01 c.45.1.1
1wocA/1wocA-YCR024C-B-local-adpstyle1.a2m 1.4973e+013.1176e+01
1wocA/1wocA-YCR024C-B-local-adpstyle5.a2m 1.4973e+013.1176e+01
1nziA/YCR024C-B-1nziA-local-stride-ebghtl-0.3-adpstyle5.a2m 1.8627e+013.1407e+01 b.23.1.1
g.3.11.1
1m3gA/YCR024C-B-1m3gA-local-adpstyle1.a2m 2.3382e+013.1693e+01 c.45.1.1
1m3gA/YCR024C-B-1m3gA-local-adpstyle5.a2m 2.3382e+013.1693e+01 c.45.1.1
1v1qA/1v1qA-YCR024C-B-local-adpstyle5.a2m 1.6512e+013.1727e+01
1v1qA/1v1qA-YCR024C-B-local-adpstyle1.a2m 1.6512e+013.1727e+01
2cptA/YCR024C-B-2cptA-local-adpstyle1.a2m 2.3524e+013.1890e+01
2cptA/YCR024C-B-2cptA-local-adpstyle5.a2m 2.3524e+013.1890e+01
2aexA/2aexA-YCR024C-B-global-adpstyle5.a2m 1.5166e+013.2356e+01
2aexA/2aexA-YCR024C-B-global-adpstyle1.a2m 1.5166e+013.2356e+01
1b8zA/YCR024C-B-1b8zA-global-str2-1.5-adpstyle5.a2m 1.2078e+013.2518e+01 1huuA a.55.1.1
1nziA/YCR024C-B-1nziA-local-adpstyle5.a2m 1.8627e+013.3800e+01 b.23.1.1
g.3.11.1
1nziA/YCR024C-B-1nziA-local-adpstyle1.a2m 1.8627e+013.3800e+01 b.23.1.1
g.3.11.1
1nziA/YCR024C-B-1nziA-simplesw-adpstyle1.a2m 1.8627e+013.4741e+01 b.23.1.1
g.3.11.1
1nziA/YCR024C-B-1nziA-simplesw-adpstyle5.a2m 1.8627e+013.4741e+01 b.23.1.1
g.3.11.1
2aexA/2aexA-YCR024C-B-local-adpstyle5.a2m 1.5166e+013.6211e+01
2aexA/2aexA-YCR024C-B-local-adpstyle1.a2m 1.5166e+013.6211e+01
1nziA/YCR024C-B-1nziA-global-adpstyle1.a2m 1.8627e+013.8878e+01 b.23.1.1
g.3.11.1
1nziA/YCR024C-B-1nziA-global-adpstyle5.a2m 1.8627e+013.8878e+01 b.23.1.1
g.3.11.1
2aexA/YCR024C-B-2aexA-global-adpstyle1.a2m 1.5166e+014.2505e+01
2aexA/YCR024C-B-2aexA-global-adpstyle5.a2m 1.5166e+014.2505e+01
1wocA/YCR024C-B-1wocA-global-str2-1.5-adpstyle5.a2m 1.4973e+014.4908e+01
1wocA/YCR024C-B-1wocA-local-str2-1.5-adpstyle5.a2m 1.4973e+014.4977e+01
1nziA/1nziA-YCR024C-B-local-adpstyle1.a2m 1.8627e+014.6956e+01 b.23.1.1
g.3.11.1
1nziA/1nziA-YCR024C-B-local-adpstyle5.a2m 1.8627e+014.6956e+01 b.23.1.1
g.3.11.1
1v1qA/YCR024C-B-1v1qA-local-str2-1.5-adpstyle5.a2m 1.6512e+014.8798e+01
1m3gA/YCR024C-B-1m3gA-global-adpstyle1.a2m 2.3382e+014.9080e+01 c.45.1.1
1m3gA/YCR024C-B-1m3gA-global-adpstyle5.a2m 2.3382e+014.9080e+01 c.45.1.1
1nziA/1nziA-YCR024C-B-global-adpstyle1.a2m 1.8627e+015.3789e+01 b.23.1.1
g.3.11.1
1nziA/1nziA-YCR024C-B-global-adpstyle5.a2m 1.8627e+015.3789e+01 b.23.1.1
g.3.11.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001