# List of top-scoring protein chains for t2k-100-30-str hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1e4fT 419 1.89e-01 1e4fT c.55.1.1 33453 c.55.1.1 33454 1lnrI 134 3.17e+00 6prcL 273 5.18e+00 6prcL f.2.1.2 43434 1fthA 122 5.18e+00 d.150.1.2 60028 1dxrL 273 5.26e+00 6prcL f.2.1.2 43431 1ewjA 126 5.65e+00 1ecsA d.32.1.2 59526 1ecsA 126 5.83e+00 1ecsA d.32.1.2 59407 1lylA 504 6.29e+00 1lylA b.40.4.1 25261 d.104.1.1 40717 1h95A 79 6.79e+00 b.40.4.5 65742 1gatA 60 6.90e+00 1gatA g.39.1.1 45106 1g9zA 152 8.14e+00 1bp7A d.95.2.1 60408 2gatA 66 8.30e+00 1gatA g.39.1.1 45102 3gatA 66 8.38e+00 1gatA g.39.1.1 45103 1fd9A 213 9.89e+00 1fd9A d.26.1.1 59771 1fx3B 169 1.41e+01 1fx3B d.33.1.1 38525 1bza 262 1.56e+01 1btl e.3.1.1 42701 1vdrA 162 1.64e+01 1vdrA c.71.1.1 34893 1jssA 224 1.65e+01 1dj0A 264 1.81e+01 1dj0A d.58.35.1 39497 d.58.35.1 39498 1aoxA 203 1.84e+01 1aoxA c.62.1.1 34151 6gsvA 217 1.91e+01 1b8xA a.45.1.1 17633 c.47.1.5 32925 1qhuA 460 2.00e+01 1qhuA b.66.1.1 27530 b.66.1.1 27531 1e1oA 504 2.00e+01 1lylA b.40.4.1 25258 d.104.1.1 40714 1hxs1 302 2.02e+01 1lst 239 2.13e+01 1lst c.94.1.1 35755 1jceA 344 2.16e+01 c.55.1.1 62876 c.55.1.1 62877 1lj2A 110 2.22e+01 1bp7A 152 2.25e+01 1bp7A d.95.2.1 40568 1wdb 104 2.27e+01 1cyo d.120.1.1 41070 1wpoB 256 2.32e+01 1lay b.57.1.1 27013 1b3nA 412 2.39e+01 1dd8A c.95.1.1 35966 c.95.1.1 35967 1c9oA 66 2.46e+01 1mjc b.40.4.5 25325 1jcfA 344 2.48e+01 c.55.1.1 62878 c.55.1.1 62879 1pov1 302 2.50e+01 1pov1 1af5 126 2.56e+01 1bp7A d.95.2.1 40572 1jjtA 228 2.64e+01 1a7tA d.157.1.1 63139 2asi 360 2.66e+01 2rmpA b.50.1.2 26824 1dd6A 228 2.67e+01 1a7tA d.157.1.1 42054 1e0bA 68 2.76e+01 1e0bA d.9.2.2 37476 1ytbB 180 2.78e+01 1ytbA d.129.1.1 41278 d.129.1.1 41279 1jb0A 755 2.84e+01 1jb0A f.2.1.12 62820 1iazA 179 2.88e+01 1iazA b.97.1.1 62131 1h9jA 145 2.89e+01 1h9jA b.40.6.2 60829 b.40.6.2 60830 1g6aA 271 2.90e+01 1btl e.3.1.1 42704 1dc1A 323 2.92e+01 1dc1A c.52.1.11 33321 1aocA 175 2.94e+01 1aocA g.17.1.5 44817 1h9mA 145 2.95e+01 1h9jA b.40.6.2 60833 b.40.6.2 60834 1a34A 159 2.98e+01 1a34A b.10.1.2 23286 1ema 236 3.02e+01 1ema d.22.1.1 38339 1ks2A 219 3.06e+01 1a0k 131 3.12e+01 3nul d.110.1.1 40892 1ffk1 177 3.16e+01 1ffk1 1e88A 160 3.18e+01 g.14.1.2 44669 g.14.1.2 44670 g.27.1.1 44950 2tysA 268 3.22e+01 2tysA c.1.2.4 28572 1qopA 268 3.22e+01 2tysA c.1.2.4 28570 1dugA 234 3.25e+01 1b8xA a.45.1.1 17718 c.47.1.5 33012 1cdwA 179 3.34e+01 1ytbA d.129.1.1 41212 d.129.1.1 41213 1a27 289 3.70e+01 1fds c.2.1.2 29839 1hxpA 348 3.75e+01 1guqA d.13.1.2 37530 d.13.1.2 37531 1ax8 146 3.80e+01 1ax8 a.26.1.1 16844 1fdt 327 3.80e+01 1fds c.2.1.2 29841 1lkzA 219 3.97e+01