# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1e4fT	419	2.56e+00	1e4fT	c.55.1.1	33453
				c.55.1.1	33454
1bp7A	152	3.65e+00	1bp7A	d.95.2.1	40568
1g9zA	152	3.82e+00	1bp7A	d.95.2.1	60408
1af5	126	4.02e+00	1bp7A	d.95.2.1	40572
1e8gA	560	4.57e+00	1qltA	d.58.32.1	39455
				d.145.1.1	41718
1qltA	560	4.60e+00	1qltA	d.58.32.1	39457
				d.145.1.1	41720
1lnrI	134	4.88e+00			
1vaoA	560	5.95e+00	1qltA	d.58.32.1	39461
				d.145.1.1	41724
1dxrL	273	6.64e+00	6prcL	f.2.1.2	43431
6prcL	273	6.75e+00	6prcL	f.2.1.2	43434
1a27	289	9.88e+00	1fds	c.2.1.2	29839
1fdt	327	9.97e+00	1fds	c.2.1.2	29841
1lay	256	1.06e+01	1lay	b.57.1.1	27014
1wpoB	256	1.09e+01	1lay	b.57.1.1	27013
1gatA	60	1.17e+01	1gatA	g.39.1.1	45106
2gatA	66	1.30e+01	1gatA	g.39.1.1	45102
3gatA	66	1.30e+01	1gatA	g.39.1.1	45103
1c9oA	66	1.31e+01	1mjc	b.40.4.5	25325
1fd9A	213	1.41e+01	1fd9A	d.26.1.1	59771
1lj2A	110	1.43e+01			
1smpI	101	1.44e+01	1smpI	b.61.2.1	27417
1efnB	152	1.51e+01	1efnB	d.102.1.1	40699
1h95A	79	1.51e+01		b.40.4.5	65742
2tysA	268	1.51e+01	2tysA	c.1.2.4	28572
1qopA	268	1.56e+01	2tysA	c.1.2.4	28570
1fds	327	1.71e+01	1fds	c.2.1.2	29838
2wsyA	268	1.72e+01	2tysA	c.1.2.4	28588
1bksA	268	1.77e+01	2tysA	c.1.2.4	28585
1jb0A	755	1.83e+01	1jb0A	f.2.1.12	62820
1jepA	222	2.17e+01		d.36.1.1	66612
1aocA	175	2.19e+01	1aocA	g.17.1.5	44817
1eyqA	222	2.21e+01	1eypA	d.36.1.1	38534
1wpoA	256	2.24e+01	1lay	b.57.1.1	27012
1eypA	222	2.25e+01	1eypA	d.36.1.1	38536
1bhdA	118	2.34e+01	1bkrA	a.40.1.1	17398
1jjtA	228	2.45e+01	1a7tA	d.157.1.1	63139
1ecsA	126	2.53e+01	1ecsA	d.32.1.2	59407
1ewjA	126	2.63e+01	1ecsA	d.32.1.2	59526
1dd6A	228	2.87e+01	1a7tA	d.157.1.1	42054
1h9jA	145	2.87e+01	1h9jA	b.40.6.2	60829
				b.40.6.2	60830
1h9mA	145	2.90e+01	1h9jA	b.40.6.2	60833
				b.40.6.2	60834
1aoxA	203	2.91e+01	1aoxA	c.62.1.1	34151
1fthA	122	3.14e+01		d.150.1.2	60028
1qhuA	460	3.31e+01	1qhuA	b.66.1.1	27530
				b.66.1.1	27531
1dc1A	323	3.41e+01	1dc1A	c.52.1.11	33321
6gsvA	217	3.48e+01	1b8xA	a.45.1.1	17633
				c.47.1.5	32925
1lylA	504	3.64e+01	1lylA	b.40.4.1	25261
				d.104.1.1	40717
1nbaA	264	3.92e+01	1nbaA	c.33.1.1	31753
1lst	239	3.96e+01	1lst	c.94.1.1	35755
1ttbA	127	3.99e+01	1etb1	b.3.4.1	22543