# List of top-scoring protein chains for t2k-100-30-alpha hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1h95A	79	2.30e+00		b.40.4.5	65742
1e4fT	419	3.14e+00	1e4fT	c.55.1.1	33453
				c.55.1.1	33454
1dj0A	264	8.35e+00	1dj0A	d.58.35.1	39497
				d.58.35.1	39498
1fdt	327	1.05e+01	1fds	c.2.1.2	29841
3gatA	66	1.25e+01	1gatA	g.39.1.1	45103
1bksA	268	1.27e+01	2tysA	c.1.2.4	28585
2tysA	268	1.34e+01	2tysA	c.1.2.4	28572
1lj2A	110	1.40e+01			
1gatA	60	1.42e+01	1gatA	g.39.1.1	45106
2gatA	66	1.42e+01	1gatA	g.39.1.1	45102
6prcL	273	1.46e+01	6prcL	f.2.1.2	43434
1qopA	268	1.50e+01	2tysA	c.1.2.4	28570
1lnrI	134	1.65e+01			
2wsyA	268	1.65e+01	2tysA	c.1.2.4	28588
1ewjA	126	1.69e+01	1ecsA	d.32.1.2	59526
1ttbA	127	1.84e+01	1etb1	b.3.4.1	22543
1qhuA	460	1.85e+01	1qhuA	b.66.1.1	27530
				b.66.1.1	27531
1kvoA	124	1.89e+01	1poa	a.133.1.2	19564
1dxrL	273	1.90e+01	6prcL	f.2.1.2	43431
1eta1	127	1.91e+01	1etb1		
1fds	327	1.96e+01	1fds	c.2.1.2	29838
1ecsA	126	1.96e+01	1ecsA	d.32.1.2	59407
1etb1	127	2.04e+01	1etb1		
1eueA	86	2.10e+01	1cyo	d.120.1.1	59504
1vokA	200	2.13e+01	1ytbA	d.129.1.1	41242
				d.129.1.1	41243
1fthA	122	2.21e+01		d.150.1.2	60028
2abk	211	2.31e+01	2abk	a.96.1.1	18743
1div	149	2.37e+01	1div	d.99.1.1	40692
				d.100.1.1	40693
1a27	289	2.58e+01	1fds	c.2.1.2	29839
1jb0A	755	2.59e+01	1jb0A	f.2.1.12	62820
1moh	142	2.63e+01	1flp	a.1.1.2	15012
1flp	142	2.65e+01	1flp	a.1.1.2	15011
1efnB	152	2.86e+01	1efnB	d.102.1.1	40699
1a80	277	2.88e+01	1frb	c.1.7.1	28700
1dc1A	323	2.91e+01	1dc1A	c.52.1.11	33321
1f41A	127	2.93e+01	1etb1	b.3.4.1	22539
1lrzA	426	2.95e+01			
1ytbB	180	3.09e+01	1ytbA	d.129.1.1	41278
				d.129.1.1	41279
1hxrA	115	3.09e+01	1fwqA	b.88.1.1	28392
1jepA	222	3.11e+01		d.36.1.1	66612
1af5	126	3.26e+01	1bp7A	d.95.2.1	40572
1f86A	115	3.29e+01	1etb1	b.3.4.1	59689
1bp7A	152	3.33e+01	1bp7A	d.95.2.1	40568
1b0b	142	3.37e+01	2fal	a.1.1.2	15010
1wdb	104	3.51e+01	1cyo	d.120.1.1	41070
1aoxA	203	3.56e+01	1aoxA	c.62.1.1	34151
1nbaA	264	3.72e+01	1nbaA	c.33.1.1	31753
2pabA	127	3.75e+01	1etb1	b.3.4.1	22597
1iazA	179	3.96e+01	1iazA	b.97.1.1	62131