# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1iqrA 420 3.66e+00 a.99.1.1 66275 c.28.1.1 66276 1kxpD 458 4.93e+00 1fonA 240 5.05e+00 5ptp b.47.1.2 26231 1qkkA 155 5.37e+00 1dbwA c.23.1.1 31104 1l5zA 155 5.74e+00 1kgsA 225 6.29e+00 a.4.6.1 68596 c.23.1.1 68597 1k8eA 345 6.87e+00 1g8iA 190 7.98e+00 1rec a.39.1.5 60363 1aoa 275 8.11e+00 1aoa a.40.1.1 17396 a.40.1.1 17397 1mhyB 395 8.23e+00 1mtyB a.25.1.2 16781 1ljrA 244 8.49e+00 1ljrA a.45.1.1 17707 c.47.1.5 33001 1i37A 260 1.00e+01 1a28A a.123.1.1 61583 1l2qA 458 1.05e+01 1l2rA 458 1.06e+01 1iq3A 110 1.06e+01 1iq3A a.39.1.6 62640 1j78A 458 1.10e+01 a.126.1.1 66397 a.126.1.1 66398 a.126.1.1 66399 1cjaA 342 1.13e+01 1cjaA d.144.1.3 41708 1hw1A 239 1.20e+01 1e2xA a.4.5.6 16111 a.78.1.1 18441 1b47A 304 1.29e+01 2cblA a.39.1.7 17381 a.48.1.1 17775 d.93.1.1 40529 1a28A 256 1.36e+01 1a28A a.123.1.1 19290 2cblA 305 1.43e+01 2cblA a.39.1.7 17380 a.48.1.1 17774 d.93.1.1 40528 1l2iA 261 1.52e+01 1hm6A 346 1.60e+01 1avc a.65.1.1 18147 1ede 310 1.60e+01 1b6g c.69.1.8 34662 1e2xA 243 1.68e+01 1e2xA a.4.5.6 16113 a.78.1.1 18443 1ddf 127 1.70e+01 1ddf a.77.1.1 18423 1rec 201 1.74e+01 1rec a.39.1.5 17326 5pal 109 1.75e+01 1a75A a.39.1.4 17215 1rro 108 1.81e+01 1a75A a.39.1.4 17195 1dttA 560 1.83e+01 1rthA c.55.3.1 33611 e.8.1.2 43088 1ads 315 1.89e+01 1frb c.1.7.1 28671 1el3A 316 1.89e+01 1frb c.1.7.1 28672 1seiA 130 1.96e+01 1seiA d.140.1.1 41463 1kl7A 514 2.17e+01 1qc5A 192 2.20e+01 1aoxA c.62.1.1 34147 1jgsA 138 2.31e+01 a.4.5.28 66683 4ubpA 101 2.37e+01 1ubpA d.8.1.1 37352 2acr 315 2.44e+01 1frb c.1.7.1 28674 1e96B 203 2.50e+01 1e96B a.118.8.1 19211 1rthA 560 2.56e+01 1rthA c.55.3.1 33576 e.8.1.2 43028 1gqeA 365 2.56e+01 1euhA 475 2.64e+01 1euhA c.82.1.1 35369 1ubpA 101 2.67e+01 1ubpA d.8.1.1 37353 1pvaA 110 2.67e+01 1a75A a.39.1.4 17207 1a6dA 545 2.75e+01 1a6dA a.129.1.2 19488 c.8.5.2 30819 d.56.1.2 38936 1aq6A 253 2.87e+01 1qq5A c.108.1.1 43331 1ak5 503 2.89e+01 1ak5 c.1.5.1 28639 1b6g 310 2.92e+01 1b6g c.69.1.8 34661 4icb 76 3.00e+01 4icb a.39.1.1 17145 3rp2A 224 3.05e+01 1a7s b.47.1.2 26298 2ki5A 366 3.06e+01 1qhiA c.37.1.1 31862 1xsm 390 3.06e+01 1xsm a.25.1.2 16804 1h0oA 390 3.10e+01 1esiA 262 3.16e+01 1skf e.3.1.1 42682 1skf 262 3.19e+01 1skf e.3.1.1 42684 1sfcA 96 3.24e+01 1sfcA h.1.15.1 45643 1e9lA 377 3.25e+01 1e9lA c.1.8.5 59395 d.26.3.1 59396 1gd8A 118 3.29e+01 d.188.1.1 60445 1es5A 262 3.32e+01 1skf e.3.1.1 42679 1hh8A 213 3.42e+01 1e96B a.118.8.1 61042 1ds4A 292 3.49e+01 1ryc a.93.1.1 59129 1lshA 1056 3.53e+01 1qi6A 475 3.57e+01 1euhA c.82.1.1 35373 1mgtA 174 3.67e+01 1mgtA a.4.2.1 16078 c.55.7.1 33753 1spgB 147 3.73e+01 1cg5B a.1.1.2 15588 1ccg 291 3.74e+01 1ryc a.93.1.1 18627 1eqtA 68 3.80e+01 1b3aA d.9.1.1 37412 1ryc 294 3.81e+01 1ryc a.93.1.1 18601 1e5rA 290 3.86e+01 1e5rA b.82.2.4 59276 1ft1A 377 3.87e+01 1ft1A a.118.6.1 19186 1qq5A 253 3.88e+01 1qq5A c.108.1.1 43327 1b3aA 67 3.91e+01 1b3aA d.9.1.1 37410 2hmiA 558 3.94e+01 1rthA c.55.3.1 33604 e.8.1.2 43106 1hlvA 131 3.95e+01 a.4.1.7 65854 a.4.1.7 65855 1es4A 262 3.95e+01 1skf e.3.1.1 42683 1qhiA 366 3.97e+01 1qhiA c.37.1.1 31860 1a16 440 3.99e+01 1az9 c.55.2.1 33548 d.127.1.1 41165 1bk6A 422 3.99e+01 1bk5A a.118.1.1 19133