# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1bkpA	278	3.97e-01	1bkpA	d.117.1.1	41029
1dd5A	185	1.47e+00	1dd5A	d.67.3.1	39564
1lshB	319	2.30e+00		f.7.1.1	74245
1gq2A	555	5.23e+00		c.2.1.7	70308
				c.58.1.3	70309
1oyb	400	7.70e+00	1oyc	c.1.4.1	28602
1mpp	361	7.93e+00	2rmpA	b.50.1.2	26856
1e7uA	961	8.87e+00	1e8xA	a.118.1.6	19147
				b.7.1.1	23182
				d.15.1.5	37630
				d.144.1.4	41710
1e8xA	961	9.08e+00	1e8xA	a.118.1.6	19148
				b.7.1.1	23183
				d.15.1.5	37631
				d.144.1.4	41711
1qr6A	584	9.13e+00	1qr6A	c.2.1.7	30293
				c.58.1.3	33941
1edg	380	1.05e+01	1edg	c.1.8.3	28807
1a8l	226	1.12e+01	1a8l	c.47.1.2	32777
				c.47.1.2	32778
1e8yA	966	1.14e+01	1e8xA	a.118.1.6	19152
				b.7.1.1	23187
				d.15.1.5	37635
				d.144.1.4	41715
1ptmA	329	1.20e+01			
1dt9A	437	1.22e+01	1dt9A	c.55.4.2	33738
				d.79.3.2	39815
				d.91.1.1	40257
1tsm	316	1.48e+01	1bkpA	d.117.1.1	41024
1oya	400	1.48e+01	1oyc	c.1.4.1	28604
1oyc	400	1.50e+01	1oyc	c.1.4.1	28603
1xat	212	1.52e+01	2xat	b.81.1.3	28059
1ge9A	184	1.57e+01	1dd5A	d.67.3.1	60463
1yua	122	1.62e+01	1yua	g.41.3.3	45210
				g.41.3.3	45211
1auvA	311	1.70e+01	1auvA	c.30.1.5	31723
				d.142.1.3	41558
2xat	212	1.81e+01	2xat	b.81.1.3	28058
1hcb	260	1.86e+01	2cba	b.74.1.1	27814
1j08A	226	1.98e+01		c.47.1.2	83855
				c.47.1.2	83856
1wp5A	323	2.04e+01			
1qlmA	316	2.19e+01	1qlmA	d.147.1.1	41765
1c3pA	375	2.20e+01	1c3pA	c.42.1.2	32606
1o6zA	303	2.30e+01		c.2.1.5	81107
				d.162.1.1	81108
1jeoA	180	2.43e+01		c.80.1.3	66611
1jj2K	164	2.49e+01	1ffkJ	c.12.1.1	63096
1s72L	165	2.50e+01			
1o0sA	605	2.57e+01		c.2.1.7	86540
				c.58.1.3	86541
1ub3A	220	2.81e+01		c.1.10.1	88395
1et0A	269	2.93e+01	1et0A	e.17.1.1	43289
1mvpA	124	2.94e+01	2rspB	b.50.1.1	26775
2cab	261	3.08e+01	2cba	b.74.1.1	27906
1te6A	439	3.31e+01			
1dryA	324	3.61e+01	1drtA	b.82.2.2	28128
1drtA	324	3.72e+01	1drtA	b.82.2.2	28130
1ds1A	324	3.74e+01	1drtA	b.82.2.2	28127
1qlaB	239	3.91e+01	1qlaB	a.1.2.1	15679
				d.15.4.2	37707
1qovH	260	3.95e+01	6prcH	b.41.1.1	25464
				f.23.10.1	43457