# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jmsA 381 5.60e-01 a.60.6.1 66889 a.60.12.1 75862 d.218.1.2 75863 2fa8A 105 8.07e-01 1hu3A 260 1.09e+00 1hu3A a.118.1.14 19137 1mldA 314 1.47e+00 2cmd c.2.1.5 30122 d.162.1.1 42089 1a8a 318 3.18e+00 1avc a.65.1.1 18169 2ran 316 3.18e+00 1avc a.65.1.1 18170 1a8b 318 3.18e+00 1avc a.65.1.1 18171 1sfkA 76 4.51e+00 a.190.1.1 105488 1s28A 132 4.73e+00 d.198.1.1 105223 2bmhA 455 9.12e+00 1bu7A a.104.1.1 18941 1jmeA 455 1.10e+01 a.104.1.1 66885 1cwyA 500 1.11e+01 1cwyA c.1.8.1 28789 1eswA 500 1.12e+01 1cwyA c.1.8.1 59500 1anxA 319 1.12e+01 1avc a.65.1.1 18161 1l5jA 865 1.12e+01 a.118.15.1 73592 c.8.2.1 73593 c.83.1.1 73594 1hvd 319 1.15e+01 1avc a.65.1.1 18154 3ssi 113 1.19e+01 3ssi d.84.1.1 40032 2sicI 107 1.22e+01 3ssi d.84.1.1 40031 1tia 279 1.24e+01 3tgl c.69.1.17 34737 1uslA 170 1.27e+01 c.121.1.1 99871 1vkpA 383 1.29e+01 d.126.1.6 108686 1jpzA 473 1.30e+01 a.104.1.1 67069 1bqv 110 1.37e+01 1bqv a.60.1.1 17932 2a5yA 204 1.38e+01 2aibA 98 1.45e+01 1m4iA 181 1.61e+01 d.108.1.1 74457 1zr6A 503 1.64e+01 1adz 71 1.65e+01 1bpi g.8.1.1 44542 1mxtA 504 1.71e+01 c.3.1.2 79671 d.16.1.1 79672 1n1pA 504 1.71e+01 c.3.1.2 91546 d.16.1.1 91547 1n4wA 504 1.71e+01 c.3.1.2 91676 d.16.1.1 91677 1ijhA 504 1.76e+01 c.3.1.2 66161 d.16.1.1 66162 3sicI 107 1.82e+01 3ssi d.84.1.1 40028 1b8sA 504 1.83e+01 1b8sA c.3.1.2 30335 d.16.1.1 37866 1b4vA 504 1.84e+01 1b8sA c.3.1.2 30334 d.16.1.1 37865 1io2A 213 1.84e+01 1ekeA c.55.3.1 62612 1bu7A 455 1.91e+01 1bu7A a.104.1.1 18937 1upiA 225 1.95e+01 b.82.1.1 99757 1qrvA 73 2.00e+01 1cktA a.21.1.1 16425 1tbrR 103 2.01e+01 1tbrR g.68.1.1 44707 g.68.1.1 44708 1hma 73 2.01e+01 1cktA a.21.1.1 16427 1qrvB 73 2.01e+01 a.21.1.1 16426 1pufA 77 2.20e+01 a.4.1.1 95131 1ohuA 175 2.20e+01 f.1.4.1 93029 2bryA 497 2.35e+01 1efyA 350 2.55e+01 1a26 a.41.1.1 17413 d.166.1.2 42275 1a26 361 2.66e+01 1a26 a.41.1.1 17412 d.166.1.2 42274 1qd1A 325 3.01e+01 1qd1A d.58.34.1 39493 d.58.34.1 39494 1u2eA 289 3.10e+01 1ks9A 291 3.29e+01 a.100.1.7 68857 c.2.1.6 68858 1h21A 247 3.34e+01 a.138.1.3 76510 1yvkA 163 3.52e+01 1r6rA 100 3.58e+01 a.190.1.1 97158 1wa3A 205 3.83e+01 1vlwA 217 3.83e+01 c.1.10.1 108868 1t3qC 288 3.85e+01 d.87.2.1 106371 d.145.1.3 106372 1nqkA 381 4.00e+01 c.1.16.4 92050