a2m2html output for file tmp.a2m

Citations (SAM, SAM-T99, HMMs)

R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting remote protein homologies, Bioinformatics 14(10):846-856, 1998.
A. Krogh et al., Hidden Markov models in computational biology: Applications to protein modeling, JMB 235:1501-1531, Feb 1994.

Sequence numbers correspond to the following labels:

- YBR224W YBR224W SGDID:S0000428, Chr II from 670083-670598
- gi|6319700|ref|NP_009783.1|_1:171 Hypothetical ORF; Ybr224wp [Saccharomyces cerevisiae]
- gi|586341 sp|P38320|YB74_YEAST Hypothetical 19.3 kDa protein in FAT2-MCX1 intergenic region precursor
- gi|626241|pir||S46100 probable membrane protein YBR224w - yeast (Saccharomyces cerevisiae)
- gi|536618|emb|CAA85187.1| ORF YBR224w [Saccharomyces cerevisiae]

              10        20        30        40        50        60     
              |         |         |         |         |         |     
   1 MIFDSLTMTQSSLSLLLLTGAIFSISALYLTLFHRCATFSATSDLFLLVPLKFVSRDINDRLKTH
   2 MIFDSLTMTQSSLSLLLLTGAIFSISALYLTLFHRCATFSATSDLFLLVPLKFVSRDINDRLKTH


         70        80        90       100       110       120       130
         |         |         |         |         |         |         |
   1 YHHSCLGSPFLCIIFLFISPLLNYHFRSLVRPPKIHQKGSIPTLTKNAETRCSHHLKQAAATGEV
   2 YHHSCLGSPFLCIIFLFISPLLNYHFRSLVRPPKIHQKGSIPTLTKNAETRCSHHLKQAAATGEV


             140       150       160       170 
              |         |         |         | 
   1 CKVVVIIKGHILKDCSIFFFIIFPLIYPLFINCSSKYNGLQ
   2 CKVVVIIKGHILKDCSIFFFIIFPLIYPLFINCSSKYNGLQ