# List of top-scoring protein chains for t2k-100-30-stride-ebghtl hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1g5cA	170	2.66e+00	1g5cA	c.53.2.1	60264
1esgA	213	8.97e+00	1bam	c.52.1.3	33286
1b7gO	340	9.17e+00	1b7gO	c.2.1.3	29992
				d.81.1.1	39907
1bam	213	1.03e+01	1bam	c.52.1.3	33285
3bamB	213	1.05e+01	1bam	c.52.1.3	33289
2plc	274	1.18e+01	2plc	c.1.18.2	29614
3bamA	213	1.38e+01	1bam	c.52.1.3	33288
1e3yA	104	1.43e+01	1fadA	a.77.1.1	18426
1ituA	369	1.55e+01			
1bhtA	176	1.76e+01	1bhtA	g.10.1.1	44603
				g.14.1.1	44663
2hgf	97	1.84e+01	1bhtA	g.10.1.1	44607
1eyzA	392	2.15e+01	1ez1A	b.84.2.1	28246
				c.30.1.1	31653
				d.142.1.2	41498
1gmnA	183	2.36e+01		g.10.1.1	65315
				g.14.1.1	65316
1k7hA	476	2.49e+01			
1uby	367	2.57e+01	1uby	a.128.1.1	19435
1eps	427	2.62e+01	1eps	d.68.2.2	39586
1ez1A	392	2.63e+01	1ez1A	b.84.2.1	28248
				c.30.1.1	31655
				d.142.1.2	41500
1nhp	447	2.64e+01	1nhp	c.3.1.5	30549
				c.3.1.5	30550
				d.87.1.1	40196
1k3rA	268	2.64e+01			
1bkb	136	2.70e+01	1bkb	b.34.5.2	24609
				b.40.4.5	25341
1jsmA	325	2.72e+01		b.19.1.2	63264
2scuA	288	2.79e+01	2scuA	c.2.1.8	30303
				c.23.4.1	31131
1f6uA	55	2.93e+01	1a1tA	g.40.1.1	45164
1buoA	121	3.00e+01	1buoA	d.42.1.1	38631
1nhs	447	3.04e+01	1nhp	c.3.1.5	30555
				c.3.1.5	30556
				d.87.1.1	40199
1eudA	311	3.18e+01	2scuA	c.2.1.8	30312
				c.23.4.1	31140
1g7eA	122	3.28e+01	1g7eA	c.47.1.7	33055
1eucA	311	3.32e+01	2scuA	c.2.1.8	30311
				c.23.4.1	31139
1bqhG	129	3.38e+01	1cd8	b.1.1.1	19715
1joa	447	3.41e+01	1nhp	c.3.1.5	30563
				c.3.1.5	30564
				d.87.1.1	40203
1i1hA	219	3.55e+01	1f2vA	c.23.17.1	61530
1kafA	108	3.61e+01		d.199.1.1	68372
1hnnA	282	3.64e+01		c.66.1.15	65895
1in6A	334	3.65e+01	1hqcA	a.4.5.11	62601
				c.37.1.13	62602
1in4A	334	3.73e+01	1hqcA	a.4.5.11	62597
				c.37.1.13	62598
1glv	303	3.75e+01	1gsa	c.30.1.3	31721
				d.142.1.1	41480
1pinA	163	3.77e+01	1pinA	b.72.1.1	27802
				d.26.1.1	38431
1dliA	402	3.85e+01	1dliA	a.100.1.4	18809
				c.2.1.6	30213
				c.26.3.1	31622
1em9A	154	3.97e+01	1d1dA	a.73.1.1	18333
1e5rA	290	3.99e+01	1e5rA	b.82.2.4	59276