# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1q32A	544	2.59e-82			
1mu7A	485	4.01e-32		d.136.1.3	79475
				d.136.1.3	79476
1jy1A	464	4.41e-32		d.136.1.3	67438
				d.136.1.3	67439
2dpmA	284	2.10e+00	2dpmA	c.66.1.28	34246
1ua4A	455	4.07e+00			
1el6B	219	4.28e+00	1el6B	d.182.1.1	42607
1omiA	248	4.36e+00		a.4.5.4	87079
				b.82.3.3	87080
1el6A	219	5.97e+00	1el6B	d.182.1.1	42606
1bn7A	294	9.25e+00	1bn6A	c.69.1.8	34677
7aatA	401	1.02e+01	1ajsA	c.67.1.1	34250
1ki1B	352	1.09e+01		a.87.1.1	72497
				b.55.1.1	72498
1po5A	476	1.14e+01			
1p7gA	222	1.20e+01			
1inlA	296	1.30e+01		c.66.1.17	66220
1cqwA	295	1.35e+01	1b6g	c.69.1.8	34679
1bn6A	294	1.38e+01	1bn6A	c.69.1.8	34678
1musA	477	1.48e+01		c.55.3.4	79494
1ap8	213	1.52e+01	1ap8	d.86.1.1	40151
1vzoA	355	1.62e+01			
1mdwA	328	1.67e+01		d.3.1.3	84934
1b8aA	438	1.85e+01	1b8aA	b.40.4.1	25244
				d.104.1.1	40765
1dm5A	315	1.85e+01	1avc	a.65.1.1	18186
1jq3A	296	2.04e+01		c.66.1.17	67079
1uruA	244	2.10e+01			
1m32A	366	2.21e+01		c.67.1.3	78508
1muhA	481	2.24e+01		c.55.3.4	79485
1floA	422	2.25e+01	1floA	a.60.9.1	18106
				d.163.1.1	42166
1pvc3	238	2.54e+01	1aym3		
1n6zA	105	2.58e+01		d.74.5.1	85369
1qklA	127	2.70e+01	1qklA	d.78.1.2	39754
1uldA	150	2.70e+01			
1iz0A	302	2.74e+01		b.35.1.2	83821
				c.2.1.1	83822
1m1cA	680	2.92e+01		e.42.1.1	78395
1b06A	210	2.95e+01	1avmA	a.2.11.1	15740
				d.44.1.1	38737
1ndh	272	3.16e+01	1ndh	b.43.4.2	25662
				c.25.1.1	31552
1gkxA	388	3.39e+01		a.29.5.1	65266
				d.122.1.4	65267
1fjgJ	105	3.45e+01	1fjfJ	d.58.15.1	39330
1hyqA	263	3.58e+01	1hyqA	c.37.1.10	61412
1uz5A	402	3.63e+01			
1tbaA	67	3.66e+01	1tbaA	a.15.1.1	16380
1e32A	458	3.84e+01	1e32A	b.52.2.3	59183
				c.37.1.20	59184
				d.31.1.1	59185