# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1nkpA 88 6.88e-16 a.38.1.1 80573 1nkpB 83 8.82e-16 a.38.1.1 80574 1hloA 150 1.51e-15 1an4A a.38.1.1 17128 1an2A 86 1.67e-15 1an2A a.38.1.1 17130 1nlwB 76 2.21e-15 a.38.1.1 80634 1am9A 82 2.33e-15 1am9A a.38.1.1 17140 1uklC 61 4.74e-10 1an4A 65 1.37e-09 1an4A a.38.1.1 17136 1a0aA 63 4.92e-09 1a0aA a.38.1.1 17138 1nlwA 80 1.02e-08 a.38.1.1 80633 1mdyA 68 4.28e-08 1mdyA a.38.1.1 17132 1dh3A 55 1.19e-01 1a02J h.1.3.1 45546 1kddA 36 3.76e-01 h.1.3.1 68472 1m1jA 491 4.32e-01 h.1.8.1 74369 1korA 400 2.89e+00 c.26.2.1 72824 d.210.1.1 72825 1kgqA 274 3.29e+00 b.81.1.2 72447 2tdt 274 3.29e+00 3tdt b.81.1.2 28054 1tdtA 259 3.42e+00 3tdt b.81.1.2 28055 3tdt 274 3.42e+00 3tdt b.81.1.2 28053 1lq7A 67 4.04e+00 k.9.1.1 74183 1gotG 73 4.06e+00 1tbgE a.137.3.1 19629 1a02F 56 4.25e+00 1a02F h.1.3.1 45534 1gu4A 78 4.45e+00 h.1.3.1 83317 1ci6A 63 4.64e+00 1ci6A h.1.3.1 45548 1fu1B 203 5.23e+00 1fu1B b.59.1.1 27077 h.1.11.1 45631 1nwmX 142 5.25e+00 a.7.8.1 86301 1kd9A 36 5.34e+00 h.1.3.1 68466 1p9iA 31 5.41e+00 1ci6B 63 5.49e+00 1ci6B h.1.3.1 45549 1nfa 178 5.68e+00 1a02N b.2.5.3 22442 1e7tA 59 6.14e+00 1kd8A 36 6.15e+00 h.1.3.1 68460 1b9xB 68 6.65e+00 1tbgE a.137.3.1 19638 1hjbA 87 6.74e+00 1hjbA h.1.3.1 61073 1a93A 34 6.74e+00 1a93A h.1.3.1 45543 1fosE 60 6.90e+00 h.1.3.1 45535 1gd2G 70 7.43e+00 1gd2G h.1.3.1 45530 1ik9A 213 7.65e+00 b.59.1.1 66176 h.1.11.1 66177 1junA 44 7.82e+00 1junA h.1.3.1 45540 1bh9A 45 7.88e+00 1bh9A a.22.1.3 16483 1h89A 64 8.00e+00 h.1.3.1 65724 5csmA 256 8.12e+00 5csmA a.130.1.2 19494 1gd2E 70 8.14e+00 1gd2G h.1.3.1 45528 1a66A 178 8.35e+00 1a02N b.2.5.3 22441 1u7lA 392 8.98e+00 1gk7A 39 9.12e+00 h.1.20.1 70212 1ce9C 34 9.25e+00 1ce9C h.1.3.1 45485 1g40A 244 9.40e+00 1e5gA g.18.1.1 44823 g.18.1.1 44824 g.18.1.1 44825 g.18.1.1 44826 1dpsA 167 9.67e+00 1dpsA a.25.1.1 16716 1jnrA 643 9.67e+00 a.7.3.1 66966 c.3.1.4 66967 d.168.1.1 66968 1dpsD 167 9.71e+00 1dpsA a.25.1.1 16719 1xlyA 234 1.01e+01 1efdN 266 1.02e+01 1efdN c.92.2.1 35597 1i2kA 269 1.10e+01 1u2xA 474 1.13e+01 1a93B 34 1.14e+01 1a93B h.1.3.1 45545 1p4xA 250 1.15e+01 a.4.5.28 87784 a.4.5.28 87785 1ce9A 34 1.15e+01 1ce9C h.1.3.1 45483 1et0A 269 1.16e+01 1et0A e.17.1.1 43289 1lj2A 110 1.18e+01 h.1.13.2 73926 1rdr 461 1.20e+01 1rdr e.8.1.4 43116 1vl2A 421 1.45e+01 1ziiA 34 1.45e+01 2ztaA h.1.3.1 45479 2ztaA 34 1.45e+01 2ztaA h.1.3.1 45474 1coi 31 1.55e+01 k.5.1.1 46408 1fu1A 203 1.56e+01 1fu1B b.59.1.1 27076 h.1.11.1 45630 1m7lA 40 1.63e+01 h.1.1.1 78735 1b4pA 217 1.64e+01 a.45.1.1 83158 c.47.1.5 83159 1tbgE 68 1.70e+01 1tbgE a.137.3.1 19630 1ecmA 109 1.76e+01 1ecmA a.130.1.1 19492 1hwyA 501 1.82e+01 1hwyA c.2.1.7 30262 c.58.1.1 33910 1fs1B 141 1.83e+01 1vcbB a.157.1.1 19252 d.42.1.1 38664 1fkqA 124 1.84e+01 3lzt d.2.1.2 36601 1pb6A 212 1.93e+01 a.4.1.9 88017 a.121.1.1 88018 2eiaB 206 1.93e+01 1eia a.28.3.1 16950 a.73.1.1 18330 1eq7A 56 2.01e+01 1eq7A h.1.16.1 45655 1floA 422 2.03e+01 1floA a.60.9.1 18106 d.163.1.1 42166 1lslA 113 2.06e+01 g.60.1.1 78178 g.60.1.1 78179 1jx7A 117 2.18e+01 c.114.1.1 77195 1il6 185 2.18e+01 1alu a.26.1.1 16827 1eia 207 2.29e+01 1eia a.28.3.1 16951 a.73.1.1 18331 1e1hA 287 2.31e+01 d.92.1.7 83167 1fmhA 33 2.39e+01 1fmhB k.6.1.1 46409 1x9mA 698 2.46e+01 1pwbA 177 2.48e+01 1hg4A 279 2.70e+01 1lbd a.123.1.1 19333 1dmr 823 2.70e+01 1dmr b.52.2.2 26904 c.81.1.1 35312 1edg 380 2.72e+01 1edg c.1.8.3 28807 1ju2A 536 2.80e+01 c.3.1.2 77169 d.16.1.1 77170 1alu 186 2.85e+01 1alu a.26.1.1 16826 1fosF 57 2.86e+01 h.1.3.1 45538 1vb5A 276 2.87e+01 1gcvA 140 2.89e+01 1cg5B a.1.1.2 15410 1so7A 382 3.04e+01 1fr9A 194 3.13e+01 1fr9A c.68.1.8 34579 1li5A 461 3.15e+01 a.27.1.1 73912 c.26.1.1 73913 1dipB 78 3.27e+01 1dipB h.1.12.1 45633 1hv2A 99 3.27e+01 d.42.1.1 61287 2baa 243 3.39e+01 1cnsA d.2.1.1 36243 1csmA 256 3.47e+01 5csmA a.130.1.2 19495 1cxqA 162 3.50e+01 1cxqA c.55.3.2 33621 2bmhA 455 3.55e+01 1bu7A a.104.1.1 18941 1b9oA 123 3.57e+01 3lzt d.2.1.2 36597 1vkuA 100 3.58e+01 1behA 187 3.65e+01 1a44 b.17.1.1 23700 1t7pA 698 3.66e+01 1t7pA c.55.3.5 33712 e.8.1.1 43005 1pcxA 810 3.68e+01 1d7mA 101 3.69e+01 1d7mA h.1.10.1 45628 1hwxA 501 3.69e+01 1hwyA c.2.1.7 30250 c.58.1.1 33898 1dipA 78 3.69e+01 1dipA h.1.12.1 45632 1fqvD 149 3.74e+01 1fqvD a.157.1.1 19263 d.42.1.1 38667 1nnwA 252 3.83e+01 d.159.1.5 80674 1fqvJ 149 3.94e+01 1fqvD a.157.1.1 19266 d.42.1.1 38670 1b9uA 34 3.94e+01 1b9uA j.35.1.1 46260 1sqc 631 3.96e+01 2sqcA a.102.4.2 18858 a.102.4.2 18859