# List of top-scoring protein chains for t2k-100-30-str2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1crzA 403 4.32e-01 1crzA b.68.4.1 27629 c.51.2.1 33211 1y4wA 518 1.16e+00 1ukgA 252 1.72e+00 b.29.1.1 99489 1mkeA 152 2.12e+00 b.55.1.4 79231 1n0uA 842 2.17e+00 b.43.3.1 79757 c.37.1.8 79758 d.14.1.1 79759 d.58.11.1 79760 d.58.11.1 79761 1n3oA 252 2.46e+00 b.29.1.1 79967 1yifA 533 2.51e+00 1n9eA 787 2.92e+00 b.30.2.1 91708 d.17.2.1 91709 d.17.2.1 91710 1spjA 238 3.46e+00 1cv8 174 3.57e+00 1cv8 d.3.1.1 37089 1jbiA 100 4.16e+00 d.209.1.1 66481 1c5kA 439 4.24e+00 1crzA b.68.4.1 27630 c.51.2.1 33212 1d4vB 163 4.45e+00 1d4vB b.22.1.1 23884 1dg6A 191 4.98e+00 1d4vB b.22.1.1 23883 2pkaA 80 6.25e+00 2pkaA b.47.1.2 26302 1x0tA 120 6.41e+00 1dcuA 357 7.02e+00 1frpA e.7.1.1 42943 1yb3A 175 7.20e+00 1qg7A 67 8.02e+00 1a15A d.9.1.1 37449 1a15A 67 8.07e+00 1a15A d.9.1.1 37451 1gpwB 201 8.37e+00 c.23.16.1 65461 1nls 237 9.62e+00 1nls b.29.1.1 23928 1qqp3 220 1.03e+01 1qqp3 1d2fA 390 1.05e+01 1d2fA c.67.1.3 34411 1k9vF 201 1.08e+01 c.23.16.1 68365 3rp2A 224 1.10e+01 1a7s b.47.1.2 26298 1scs 237 1.13e+01 1nls b.29.1.1 23930 1bbt3 220 1.14e+01 1qqp3 1h1iD 350 1.17e+01 b.82.1.5 76472 1iyjB 817 1.20e+01 a.170.1.1 76948 a.171.1.1 76949 b.40.4.3 76950 b.40.4.3 76951 b.40.4.3 76952 1h1iC 350 1.30e+01 b.82.1.5 76471 1juhA 350 1.35e+01 b.82.1.5 71884 1h1iB 350 1.35e+01 b.82.1.5 76470 2kaiA 80 1.43e+01 2pkaA b.47.1.2 26306 1uowA 159 1.45e+01 b.7.1.2 107975 1tvjA 166 1.53e+01 1jv4A 162 1.54e+01 b.60.1.1 67343 1tjxA 159 1.54e+01 1d0hA 469 1.65e+01 1a8d b.29.1.6 24265 b.42.4.2 25610 1qmyA 167 1.79e+01 1qmyA d.3.1.2 37094 1csn 298 1.83e+01 1csn d.144.1.7 41664 1led 243 1.95e+01 1led b.29.1.1 24039 1iu8A 206 2.09e+01 c.56.4.1 71436 1nb5I 98 2.11e+01 d.17.1.2 80381 1slqA 278 2.19e+01 f.47.1.1 105719 1n6eA 1071 2.23e+01 b.36.1.3 80149 b.68.7.1 80150 b.69.9.1 80151 c.14.1.2 80152 1luzA 88 2.25e+01 b.40.4.5 74271 1uovA 159 2.26e+01 b.7.1.2 107974 1qy1A 174 2.27e+01 b.60.1.1 96568 1k32A 1045 2.30e+01 b.36.1.3 68068 b.68.7.1 68069 b.69.9.1 68070 c.14.1.2 68071 1k1xA 659 2.47e+01 a.8.3.2 84279 b.30.5.8 84280 c.6.2.2 84281 1bxwA 172 2.51e+01 1bxwA f.4.1.1 43743 1ac6A 110 2.51e+01 1tcrA b.1.1.1 20606 1ff4A 65 2.53e+01 g.7.1.1 83251 1zndA 174 2.57e+01 1fa0A 537 2.60e+01 1fa0B a.160.1.1 75837 d.218.1.3 75838 d.58.16.1 39335 2crvA 120 2.61e+01 1gyhA 318 2.62e+01 b.67.2.1 70757 1ks2A 219 2.69e+01 c.124.1.4 72908 d.58.40.1 72909 1a8q 274 2.71e+01 1brt c.69.1.12 34702 1mup 166 2.71e+01 1mup b.60.1.1 27133 1diwA 441 2.74e+01 1a8d b.29.1.6 24264 b.42.4.2 25609 1wyzA 242 2.78e+01 1lkzA 219 2.78e+01 c.124.1.4 73991 d.58.40.1 73992 1h4gA 207 2.79e+01 b.29.1.11 70863 2d42A 249 2.81e+01 1qh7A 207 2.82e+01 1axkA b.29.1.11 24317 1gydB 315 2.82e+01 b.67.2.1 70751 1k5wA 152 2.86e+01 b.7.1.2 68212 1uwvA 433 2.89e+01 b.40.4.12 100128 c.66.1.40 100129 1z6jT 211 2.98e+01 1hw7A 255 3.18e+01 1i7fA d.193.1.1 61297 1cfyA 143 3.32e+01 1cof d.109.1.2 40858 1o8bA 219 3.33e+01 c.124.1.4 81180 d.58.40.1 81181 2cwpA 112 3.36e+01 1d6mA 653 3.40e+01 1d6mA e.10.1.1 43248 1j31A 262 3.41e+01 d.160.1.2 90808 1kb0A 677 3.43e+01 a.3.1.6 68378 b.70.1.1 68379 2hft 218 3.51e+01 1boy b.1.2.1 21951 b.1.2.1 21952 1sznA 417 3.52e+01 b.71.1.1 106162 c.1.8.1 106163 1widA 130 3.61e+01 1xe7A 203 3.66e+01 2phlA 397 4.00e+01 1dgwA b.82.1.2 28082 b.82.1.2 28083