What the Parser Can't Do

In comparison to Anders Krogh's parser, we did not compare favorably. Some of the problems with our parser include:

Adjacent

The parser cannot find adjacent or overlapping genes.

Length

The parser only finds regions which are integer lengths of codons

False +

The parser finds too many false positives.

Large

Very large contigs cannot be parsed.

Learning

The parser was never successful in learning optimal weights for multiple sensors; instead we found weights that worked well by hand.

Eucaryotes

The parser cannot be used to parse DNA into more than two types of regions.