| gene | class | score | Locus Name | GeneProduct |
| YHR051W | 1 | 1.89 | COX6 | subunit VI of cytochrome c oxidase |
| YGL187C | 1 | 1.39 | COX4 | subunit IV of cytochrome c oxidase |
| YLR395C | 1 | 1.26 | COX8 | Cytochrome-c oxidase chain VIII |
| YDR529C | 1 | 1.12 | QCR7 | ubiquinol-cytochrome c oxidoreductase subunit 7 (14 kDa) |
| YGL191W | 1 | 1.09 | COX13 | subunit VIa of cytochrome c oxidase, may specifically interact with ATP |
| YLR038C | 1 | 1.06 | COX12 | subunit VIb of cytochrome c oxidase |
| YKL141W | 1 | 0.891 | SDH3 | succinate dehydrogenase cytochrome b |
| YBL099W | 1 | 0.871 | ATP1 | mitochondrial F1F0-ATPase alpha subunit |
| YOR065W | 1 | 0.81 | CYT1 | Cytochrome c1 |
| YDR377W | 1 | 0.647 | ATP17 | ATP synthase subunit f |
| YNL052W | 1 | 0.608 | COX5A | Cytochrome-c oxidase chain Va |
| YKL085W | -1 | 0.557 | MDH1 | mitochondrial malate dehydrogenase |
| YML120C | -1 | 0.438 | NDI1 | mitochondrial NADH ubiquinone 6 oxidoreductase |
| YPL078C | 1 | 0.383 | ATP4 | F(1)F(0)-ATPase complex delta subunit, mitochondrial |
| YJR121W | 1 | 0.304 | ATP2 | F(1)F(0)-ATPase complex beta subunit, mitochondrial |
| YLL041C | 1 | 0.281 | SDH2 | Succinate dehydrogenase (ubiquinone) iron-sulfur protein subunit |
| YKL109W | -1 | 0.278 | HAP4 | transcriptional activator protein of CYC1 (component of HAP2\/HAP3 heteromer) |
| YLR295C | 1 | 0.272 | ATP14 | ATP synthase subunit h |
| YEL024W | 1 | 0.265 | RIP1 | Rieske iron-sulfur protein of the mitochondrial cytochrome bc1 complex |
| YFR049W | -1 | 0.242 | YMR31 | mitochondrial ribosomal protein (precursor) |
| YBR039W | 1 | 0.198 | ATP3 | gamma subunit of mitochondrial ATP synthase |
| YPL262W | -1 | 0.187 | FUM1 | mitochondrial and cytoplasmic fumarase (fumarate hydralase) |
| YBL045C | 1 | 0.187 | COR1 | 44 kDa core protein of yeast coenzyme QH2 cytochrome c reductase |
| YKL150W | -1 | 0.096 | MCR1 | NADH-cytochrome b5 reductase |
| YDR178W | 1 | 0.0676 | SDH4 | succinate dehydrogenase membrane anchor subunit |
| YDR298C | 1 | 0.0437 | ATP5 | ATP synthase subunit 5\; oligomycin sensitivity-conferring protein |
| YKL148C | 1 | 0.0286 | SDH1 | flavoprotein subunit of succinate dehydrogenase |
| YDL004W | 1 | 0.02 | ATP16 | ATP synthase delta subunit |
| YOR230W | -1 | -0.107 | WTM1 | Transcriptional modulator |
| YDR456W | -1 | -0.107 | NHX1 | Na+\/H+ exchanger |
| YGR183C | 1 | -0.111 | qcr9 | 7.3 kDa subunit 9 of the ubiquinol cytochrome c oxidoreductase complex |
| YIL162W | -1 | -0.116 | SUC2 | invertase (sucrose hydrolyzing enzyme) |
| YJL166W | 1 | -0.122 | QCR8 | Ubiquinol cytochrome-c reductase subunit 8 (11 kDa protein) |
| YKL067W | -1 | -0.14 | YNK1 | Nucleoside diphosphate kinase |
| YFL018C | -1 | -0.148 | LPD1 | dihydrolipoamide dehydrogenase precursor (mature protein is the E3 component of alpha-ketoacid dehydrogenase complexes) |
| YDL067C | 1 | -0.22 | COX9 | Subunit VIIa of cytochrome c oxidase |
| YKL016C | 1 | -0.253 | ATP7 | ATP synthase d subunit |
| YMR081C | -1 | -0.285 | ISF1 | |
| YBL015W | -1 | -0.288 | ACH1 | acetyl CoA hydrolase |
| YNL005C | -1 | -0.337 | MRP7 | Mitochondrial ribosomal protein MRP7 (YmL2) (E. coli L27) |
| YFR033C | 1 | -0.371 | QCR6 | ubiquinol-cytochrome c oxidoreductase subunit 6 (17 kDa) |
| YCL052C | -1 | -0.406 | PBN1 | Protease B, nonderepressible form |
| YCL025C | -1 | -0.407 | AGP1 | Amino acid permease |
| YKL043W | -1 | -0.409 | PHD1 | putative transcription factor |
| YOL143C | -1 | -0.422 | RIB4 | 6,7-dimethyl-8-ribityllumazine synthase (DMRL synthase) |
| YDR069C | -1 | -0.453 | DOA4 | ubiquitin isopeptidase |
| YMR027W | -1 | -0.457 | HRT2 | |
| YJL026W | -1 | -0.461 | rnr2 | small subunit of ribonucleotide reductase |
| YPL271W | 1 | -0.462 | ATP15 | nuclear gene for ATP synthase epsilon subunit |
| YJR048W | -1 | -0.467 | cyc1 | iso-1-cytochrome c |
| YKL217W | -1 | -0.493 | JEN1 | carboxylic acid transporter protein homolog |
| YGR020C | -1 | -0.503 | vma7 | |
| YAR015W | -1 | -0.508 | ade1 | phosphoribosyl amino imidazolesuccinocarbozamide synthetase |
| YOR125C | -1 | -0.512 | CAT5 | may encode a protein involved in one or more monoxygenase or hydroxylase steps of ubiquinone biosynthesis |
| YNL055C | -1 | -0.536 | POR1 | Outer mitochondrial membrane porin (voltage-dependent anion channel, or VDAC) |
| YDR513W | -1 | -0.543 | TTR1 | Glutaredoxin (thioltransferase) (glutathione reductase) |
| YER141W | -1 | -0.556 | COX15 | cytochrome oxidase assembly factor |
| YNL079C | -1 | -0.561 | TPM1 | tropomyosin I |
| YIR039C | -1 | -0.57 | YPS6 | GPI-anchored aspartic protease |
| YML091C | -1 | -0.574 | RPM2 | subunit of mitochondrial RNase P |
| YBR078W | -1 | -0.587 | ECM33 | |
| YDR148C | -1 | -0.613 | KGD2 | dihydrolipoyl transsuccinylase component of alpha-ketoglutarate dehydrogenase complex in mitochondria |
| YJR095W | -1 | -0.622 | ACR1 | protein related to mitochondrial carriers |
| YMR264W | -1 | -0.629 | CUE1 | Ubc7p binding and recruitment protein |
| YIL125W | -1 | -0.629 | kgd1 | alpha-ketoglutarate dehydrogenase |
| YDR343C | -1 | -0.633 | HXT6 | Hexose transporter |
| YEL009C | -1 | -0.644 | GCN4 | transcriptional activator of amino acid biosynthetic genes |
| YML129C | -1 | -0.655 | COX14 | mitochondrial membrane protein |
| YGR174C | -1 | -0.67 | CBP4 | |
| YGR194C | -1 | -0.673 | ||
| YBL030C | -1 | -0.674 | pet9 | mitochondrial ADP\/ATP translocator |
| YOR244W | -1 | -0.68 | ESA1 | Acetyltransferase in the SAS gene family |
| YOR036W | -1 | -0.684 | pep12 | integral membrane protein\; c-terminal TMD\; located in endosome |
| YKL186C | -1 | -0.691 | MTR2 | mRNA transport regulator |
| YER031C | -1 | -0.71 | YPT31 | ras-like GTPase, highly homologous to YPT32 |
| YGR167W | -1 | -0.717 | CLC1 | Clathrin light chain |
| YDR462W | -1 | -0.719 | MRPL28 | Mitochondrial ribosomal protein MRPL28 (YmL28) |
| YGR282C | -1 | -0.724 | BGL2 | Cell wall endo-beta-1,3-glucanase |
| YOR210W | -1 | -0.728 | RPB10 | RNA polymerase II subunit |
| YKR093W | -1 | -0.728 | PTR2 | Peptide transporter |
| YMR056C | -1 | -0.735 | AAC1 | mitochondrial ADP\/ATP translocator |
| YJR158W | -1 | -0.736 | HXT16 | hexose permease |
| YKR014C | -1 | -0.739 | YPT52 | |
| YPR191W | 1 | -0.743 | QCR2 | 40 kDa ubiquinol cytochrome-c reductase core protein 2 |
| YJR094C | -1 | -0.745 | IME1 | |
| YML110C | -1 | -0.746 | DBI56 | methyltransferase |
| YLR170C | -1 | -0.752 | APS1 | clathrin-associated protein complex, small subunit |
| YDR007W | -1 | -0.754 | trp1 | n-(5'-phosphoribosyl)-anthranilate isomerase |
| YNL306W | -1 | -0.768 | ||
| YGR080W | -1 | -0.772 | TWF1 | Twinfilin A, an actin monomer sequestering protein |
| YGL192W | -1 | -0.774 | ime4 | transcription factor |
| YMR089C | -1 | -0.786 | YTA12 | mitochondrial membrane ATPase of the CDC48\/PAS1\/SEC18 (AAA) family |
| YPR047W | -1 | -0.788 | MSF1 | alpha subunit of yeast mitochondrial phenylalanyl-tRNA synthetase |
| YKL003C | -1 | -0.794 | mrp17 | Mitochondrial ribosomal protein MRP17 |
| YDR277C | -1 | -0.797 | MTH1 | Protein is 61\% identical to Msn3p |
| YNL160W | -1 | -0.804 | YGP1 | YGP1 encodes gp37, a glycoprotein synthesized in response to nutrient limitation which is homologous to the sporulation-specific SPS100 gene |
| YGR028W | -1 | -0.807 | MSP1 | 40 kDa putative membrane-spanning ATPase |
| YKR061W | -1 | -0.808 | KTR2 | putative mannosyltransferase\; type 2 membrane protein |
| YLL006W | -1 | -0.812 | MMM1 | mitochondrial outer membrane protein |
| YHR147C | -1 | -0.815 | MRPL6 | Mitochondrial ribosomal protein MRPL6 (YmL6) |
| YPL270W | -1 | -0.824 | MDL2 | |
| YGL094C | -1 | -0.824 | PAN2 | 135-kDa protein that is subunit of poly(A) ribonuclease |
| YLR043C | -1 | -0.826 | trx1 | thioredoxin |
| YBL043W | -1 | -0.826 | ECM13 | |
| YML078W | -1 | -0.829 | CPR3 | cyclophilin-3 (cyclosporin-sensitive proline rotamase-3) |
| YMR236W | -1 | -0.838 | TAF17 | TFIID subunit |
| YGR180C | -1 | -0.839 | RNR4 | |
| YBR091C | -1 | -0.844 | MRS5 | |
| YMR205C | -1 | -0.845 | pfk2 | phosphofructokinase beta subunit |
| YER001W | -1 | -0.845 | mnn1 | Alpha-1,3-mannosyltransferase |
| YGL206C | -1 | -0.848 | chc1 | presumed vesicle coat protein |
| YMR296C | -1 | -0.849 | LCB1 | Probable component of serine palmitoyltransferase, which catalyzes the first step in biosynthesis of long-chain sphingolipids |
| YPR149W | -1 | -0.857 | NCE102 | |
| YDL229W | -1 | -0.857 | ssb1 | cytoplasmic member of the HSP70 family |
| YDR342C | -1 | -0.862 | HXT7 | Hexose transporter |
| YIL062C | -1 | -0.875 | ARC15 | |
| YKR062W | -1 | -0.876 | TFA2 | Small subunit of TFIIE transcription factor |
| YOR150W | -1 | -0.877 | ||
| YML049C | -1 | -0.877 | rse1 | |
| YJL042W | -1 | -0.882 | MHP1 | Putative microtubule-associated protein (MAP) |
| YBR221C | -1 | -0.882 | pdb1 | beta subunit of pyruvate dehydrogenase (E1 beta) |
| YPR019W | -1 | -0.884 | CDC54 | |
| YJR006W | -1 | -0.884 | HYS2 | DNA polymerase delta 55 KD subunit |
| YMR220W | -1 | -0.887 | ERG8 | 48 kDa Phosphomevalonate kinase |
| YLR304C | -1 | -0.895 | aco1 | Aconitase, mitochondrial |
| YFL039C | -1 | -0.896 | act1 | Actin |
| YMR022W | -1 | -0.899 | QRI8 | ubiquitin conjugating enzyme |
| YLR390W | -1 | -0.9 | ECM19 | |
| YDL135C | -1 | -0.9 | RDI1 | |
| YMR302C | -1 | -0.901 | prp12 | Integral membrane mitochondrial protein |
| YMR272C | -1 | -0.908 | SCS7 | desaturase\/hydroxylase enzyme |
| YBR037C | -1 | -0.908 | SCO1 | inner mitochondrial membrane protein |
| YDL048C | -1 | -0.911 | STP4 | |
| YKL093W | -1 | -0.914 | MBR1 | |
| YLR203C | -1 | -0.919 | mss51 | |
| YDR497C | -1 | -0.922 | ITR1 | myo-inositol transporter |
| YPR166C | -1 | -0.925 | mrp2 | 14 kDa mitochondrial ribosomal protein\; homologous to E. coli S14 protein |
| YMR319C | -1 | -0.926 | FET4 | Low-affinity Fe(II) transport protein |
| YJR077C | -1 | -0.926 | MIR1 | Identified as mitochondrial import receptor (p32) and as PTP (PiC), a mitochondrial phosphate transport protein. |
| YKL193C | -1 | -0.927 | SDS22 | Glc7p regulatory subunit |
| YMR021C | -1 | -0.928 | MAC1 | metal-binding transcriptional activator |
| YDL137W | -1 | -0.931 | arf2 | ADP-ribosylation factor 2 |
| YOR317W | -1 | -0.937 | FAA1 | long chain fatty acyl:CoA synthetase |
| YPL149W | -1 | -0.946 | APG5 | |
| YOR017W | -1 | -0.946 | pet127 | Mitochondrial membrane protein |
| YKL129C | -1 | -0.946 | MYO3 | myosin I |
| YOR259C | -1 | -0.95 | RPT4 | ATPase\; component of the 26S proteasome cap subunit |
| YCR018C | -1 | -0.95 | srd1 | |
| YJR156C | -1 | -0.953 | THI11 | Thiamine biosynthetic enzyme |
| YBR010W | -1 | -0.954 | HHT1 | Histone H3 (HHT1 and HHT2 code for identical proteins) |
| YGL062W | -1 | -0.955 | PYC1 | pyruvate carboxylase |
| YOR020C | -1 | -0.962 | HSP10 | 10 kDa mitochondrial heat shock protein |
| YJL180C | -1 | -0.963 | ATP12 | |
| YDR001C | -1 | -0.966 | NTH1 | neutral trehalase |
| YMR024W | -1 | -0.97 | ||
| YGL208W | -1 | -0.972 | SIP2 | |
| YHR096C | -1 | -0.98 | HXT5 | hexose transporter |
| YFL014W | -1 | -0.984 | HSP12 | 12 kDa heat shock protein |
| YNL082W | -1 | -0.987 | pms1 | MutL homolog, similar to Mlh1p, associates with Mlh1p, possibly forming a heterodimer, Pms1p and Msh1p act in concert to bind to a Msh2p-heteroduplex complex containing a G-T mismatch |
| YLR160C | -1 | -0.987 | ASP3 | nitrogen catabolite-regulated cell-wall L-asparaginase II |
| YIL138C | -1 | -0.989 | TPM2 | Tropomyosin isoform 2 |
| YCR005C | -1 | -0.99 | CIT2 | non-mitochondrial citrate synthase |
| YBR035C | -1 | -0.992 | PDX3 | pyridoxine (pyridoxiamine) phosphate oxidase |
| YKL062W | -1 | -0.993 | MSN4 | zinc finger protein |
| YCL067C | -1 | -0.993 | alpha2 | |
| YIL048W | -1 | -0.994 | NEO1 | P-Type ATPase |
| YLR174W | -1 | -0.998 | IDP2 | Cytosolic form of NADP-dependent isocitrate dehydrogenase |
| YKL200C | -1 | -0.999 | ||
| YOL096C | -1 | -1 | COQ3 | 3,4-dihydroxy-5-hexaprenylbenzoate methyltransferase |
| YNR049C | -1 | -1 | MSO1 | small hydrophilic protein, enriched in microsomal membrane fraction, interacts with Sec1p |
| YOR136W | -1 | -1.01 | IDH2 | NAD+-dependent isocitrate dehydrogenase |
| YDR050C | -1 | -1.01 | TPI1 | triosephosphate isomerase |
| YDL217C | -1 | -1.01 | TIM22 | |
| YPL053C | -1 | -1.02 | KTR6 | mannosylphosphate transferase |
| YPL031C | -1 | -1.02 | pho85 | negative transcriptional regulator, protein kinase homolog |
| YOR327C | -1 | -1.02 | SNC2 | vesicle-associated membrane protein (synaptobrevin) homolog |
| YNL272C | -1 | -1.02 | sec2 | GDP\/GTP exchange factor for Sec4p |
| YNL135C | -1 | -1.02 | fpr1 | peptidylprolyl cis-trans isomerase |
| YKL079W | -1 | -1.02 | SMY1 | kinesin heavy chain homolog, but is not believed to act as a kinesin, colocalizes with Myo2p |
| YHR050W | -1 | -1.02 | SMF2 | localized to mitochondrial membrane |
| YHL009C | -1 | -1.02 | yap3 | |
| YGR076C | -1 | -1.02 | MRPL25 | Mitochondrial ribosomal protein MRPL25 (YmL25) |
| YGR013W | -1 | -1.02 | SNU71 | |
| YGL115W | -1 | -1.02 | SNF4 | associates with Snf1p |
| YER178W | -1 | -1.02 | pda1 | alpha subunit of pyruvate dehydrogenase (E1 alpha) |
| YER161C | -1 | -1.02 | spt2 | non-specific DNA binding protein (sin1) |
| YDL190C | -1 | -1.02 | UFD2 | |
| YDL141W | -1 | -1.02 | BPL1 | Biotin:apoprotein ligase |
| YOL062C | -1 | -1.03 | APM4 | Clathrin associated protein, medium subunit |
| YDR406W | -1 | -1.03 | PDR15 | probable multidrug resistance transporter |
| YDR225W | -1 | -1.03 | HTA1 | Histone H2A (HTA1 and HTA2 code for nearly identical proteins) |
| YBL021C | -1 | -1.03 | HAP3 | transcriptional activator protein of CYC1 |
| YPL177C | -1 | -1.04 | CUP9 | putative DNA binding protein which shows similarity in homeobox domain to human proto-oncogene PBX1 |
| YPL092W | -1 | -1.04 | SSU1 | major facilitator superfamily protein |
| YOR191W | -1 | -1.04 | RIS1 | contains motifs that are present in a family of DNA-dependent ATPases, the SWI2\/SNF2-like proteins |
| YOL148C | -1 | -1.04 | SPT20 | transcription factor, member of the histone acetyltransferase SAGA complex |
| YLR155C | -1 | -1.04 | ASP3 | nitrogen catabolite-regulated cell-wall L-asparaginase II |
| YLL001W | -1 | -1.04 | DNM1 | Dynamin-related protein |
| YKR066C | -1 | -1.04 | CCP1 | Cytochrome-c peroxidase |
| YGR088W | -1 | -1.04 | CTT1 | cytoplasmic catalase T |
| YGR049W | -1 | -1.04 | SCM4 | |
| YEL021W | -1 | -1.04 | ura3 | orotidine-5'-phosphate decarboxylase |
| YMR261C | -1 | -1.05 | TPS3 | 115 kD regulatory subunit of trehalose-6-phosphate synthase\/phosphatase complex |
| YML113W | -1 | -1.05 | DAT1 | datin, an oligo(dA).oligo(dT)-binding protein |
| YLR299W | -1 | -1.05 | ECM38 | gamma-glutamyltransferase homolog |
| YJL102W | -1 | -1.05 | MEF2 | mitochondrial elongation factor G-like protein |
| YJL063C | -1 | -1.05 | MRPL8 | Mitochondrial ribosomal protein MRPL8 (YmL8) (E. coli L17) |
| YGL077C | -1 | -1.05 | HNM1 | Transporter (permease) for choline and nitrogen mustard\; share homology with UGA4 |
| YER153C | -1 | -1.05 | pet122 | translational activator of cytochrome c oxidase subunit III |
| YER149C | -1 | -1.05 | PEA2 | Protein with coiled-coil domain |
| YDR073W | -1 | -1.05 | SNF11 | component of SWI\/SNF global transcription activator complex |
| YCR020C | -1 | -1.05 | PET18 | |
| YPR010C | -1 | -1.06 | ||
| YNL268W | -1 | -1.06 | LYP1 | lysine permease |
| YLR396C | -1 | -1.06 | vps33 | |
| YHR086W | -1 | -1.06 | NAM8 | putative RNA binding protein, involved in meiosis-specific splicing of the REC107 transcripts in cooperation with the Mer1 protein |
| YGL009C | -1 | -1.06 | leu1 | isopropylmalate isomerase |
| YDR030C | -1 | -1.06 | RAD28 | |
| YBL090W | -1 | -1.06 | MRP21 | Component of the small subunit of mitochondrial ribosomes |
| YOR278W | -1 | -1.07 | HEM4 | uroporphyrinogen III synthase |
| YOR158W | -1 | -1.07 | pet123 | Mitochondrial ribosomal protein of small subunit |
| YNL137C | -1 | -1.07 | nam9 | putative mitochondrial S4 ribosomal protein |
| YNL031C | -1 | -1.07 | HHT2 | Histone H3 (HHT1 and HHT2 code for identical proteins) |
| YML028W | -1 | -1.07 | TSA1 | thioredoxin-peroxidase (TPx)\; reduces H2O2 and alkyl hydroperoxides with the use of hydrogens provided by thioredoxin, thioredoxin reductase, and NADPH |
| YKL087C | -1 | -1.07 | CYT2 | cytochrome c1 heme lyase |
| YJL096W | -1 | -1.07 | ||
| YGR220C | -1 | -1.07 | MRPL9 | Mitochondrial ribosomal protein MRPL9 (YmL9) (E. coli L3) (human MRL3) |
| YFL031W | -1 | -1.07 | HAC1 | bZIP (basic-leucine zipper) protein |
| YDR397C | -1 | -1.07 | NCB2 | |
| YDR322W | -1 | -1.07 | MRPL35 | Mitochondrial ribosomal protein MRPL35 (YmL35) |
| YDL066W | -1 | -1.07 | IDP1 | Mitochondrial form of NADP-specific isocitrate dehydrogenase |
| YPL010W | -1 | -1.08 | RET3 | vesicle coat component |
| YNL148C | -1 | -1.08 | ALF1 | cofactor B |
| YMR234W | -1 | -1.08 | rnh1 | ribonuclease H |
| YMR203W | -1 | -1.08 | TOM40 | Mitochondrial outer membrane protein\; forms the outer membrane import channel |
| YMR070W | -1 | -1.08 | MOT3 | 2 Cys2-His2 zinc fingers at c-terminus, glutamine and asparagine rich |
| YGR222W | -1 | -1.08 | pet54 | translational activator of cytochrome c oxidase subunit III |
| YGR084C | -1 | -1.08 | MRP13 | 35 kDa mitochondrial ribosomal small subunit protein |
| YER022W | -1 | -1.08 | SRB4 | subunit of RNA polymerase II holoenzyme\/mediator complex |
| YEL066W | -1 | -1.08 | HPA3 | |
| YPR001W | -1 | -1.09 | cit3 | Mitochondrial isoform of citrate synthase |
| YOR067C | -1 | -1.09 | alg8 | glycosyl transferase |
| YMR267W | -1 | -1.09 | ppa2 | mitochondrial inorganic pyrophosphatase |
| YMR083W | -1 | -1.09 | adh3 | alcohol dehydrogenase isoenzyme III |
| YLR081W | -1 | -1.09 | gal2 | galactose permease |
| YGR216C | -1 | -1.09 | gpi1 | |
| YER125W | -1 | -1.09 | RSP5 | Rsp5p encodes a hect (homologous to E6-AP C terminus) and encodes a ubiquitin-protein ligase (E3 enzyme) |
| YDR160W | -1 | -1.09 | SSY1 | |
| YDL165W | -1 | -1.09 | cdc36 | nuclear protein that negatively regulates basal transcription |
| YDL164C | -1 | -1.09 | cdc9 | DNA ligase |
| YOR032C | -1 | -1.1 | HMS1 | myc-family transcription factor homolog |
| YOL122C | -1 | -1.1 | SMF1 | has been localized to both the plasma membrane and the mitochondrial membrane |
| YLR298C | -1 | -1.1 | YHC1 | |
| YLR157C | -1 | -1.1 | ASP3 | nitrogen catabolite-regulated cell-wall L-asparaginase II |
| YJR106W | -1 | -1.1 | ECM27 | |
| YGR217W | -1 | -1.1 | CCH1 | putative calcium channel |
| YBR222C | -1 | -1.1 | FAT2 | |
| YBR085W | -1 | -1.1 | AAC3 | mitochondrial ADP\/ATP translocator |
| YPL024W | -1 | -1.11 | nce4 | |
| YLR240W | -1 | -1.11 | vps34 | phosphatidylinositol 3-kinase |
| YLR191W | -1 | -1.11 | PEX13 | Peroxisomal membrane protein that contains Src homology 3 (SH3) domain |
| YGL255W | -1 | -1.11 | ZRT1 | |
| YPR135W | -1 | -1.12 | ctf4 | DNA polymerase alpha binding protein |
| YOL110W | -1 | -1.12 | SHR5 | |
| YMR193W | -1 | -1.12 | ||
| YML099C | -1 | -1.12 | arg81 | zinc-finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type |
| YLR142W | -1 | -1.12 | put1 | proline oxidase |
| YKL060C | -1 | -1.12 | FBA1 | aldolase |
| YHR164C | -1 | -1.12 | DNA2 | DNA replication helicase |
| YBR023C | -1 | -1.12 | chs3 | chitin synthase 3 |
| YPR180W | -1 | -1.13 | AOS1 | |
| YPR168W | -1 | -1.13 | NUT2 | 21 kD mediator subunit of RNA polymerase II holoenzyme |
| YOR035C | -1 | -1.13 | SHE4 | |
| YNL330C | -1 | -1.13 | rpd3 | histone deacetylase |
| YMR167W | -1 | -1.13 | MLH1 | MutL homolog, forms a complex with Pms1p and Msh2p to repair mismatched DNA |
| YKL104C | -1 | -1.13 | GFA1 | Glutamine_fructose-6-phosphate amidotransferase (glucoseamine-6-phosphate synthase) |
| YJL154C | -1 | -1.13 | vps35 | retromer complex component |
| YIL050W | -1 | -1.13 | PCL7 | PHO85 cyclin |
| YGR207C | 1 | -1.13 | ||
| YGL180W | -1 | -1.13 | APG1 | Protein kinase |
| YDR405W | -1 | -1.13 | MRP20 | 263-amino acid mitochondrial ribosomal large subunit protein\; similar to L23 family of ribosomal proteins |
| YDR323C | -1 | -1.13 | pep7 | cytosolic and peripheral membrane protein with three zinc fingers\; cysteine rich regions of amino acids are essential for function |
| YCL008C | -1 | -1.13 | stp22 | |
| YPR066W | -1 | -1.14 | UBA3 | ubiquitin-like protein activating enzyme |
| YPR018W | -1 | -1.14 | RLF2 | p90 subunit of yeast Chromatin Assembly Factor-I (CAF-I) |
| YOR148C | -1 | -1.14 | SPP2 | |
| YNL117W | -1 | -1.14 | MLS1 | carbon-catabolite sensitive malate synthase |
| YLR220W | -1 | -1.14 | CCC1 | Possible transmembrane Ca2+ transporter |
| YKL092C | -1 | -1.14 | BUD2 | GTPase-activating protein (GAP) for Rsr1p\/Bud1p |
| YER168C | -1 | -1.14 | CCA1 | tRNA nucleotidyltransferase (tRNA CCA-pyrophosphorylase) |
| YAL026C | -1 | -1.14 | DRS2 | Membrane-spanning Ca-ATPase (P-type),member of the cation transport (E1-E2) ATPases |
| YOR176W | -1 | -1.15 | HEM15 | ferrochelatase (protoheme ferrolyase) |
| YNL073W | -1 | -1.15 | MSK1 | mitochondrial lysine-tRNA synthetase |
| YLR420W | -1 | -1.15 | ura4 | dihydrooratase |
| YLR025W | -1 | -1.15 | snf7 | |
| YHR165C | -1 | -1.15 | PRP8 | RNA splicing factor with DEAD-box motif |
| YPL120W | -1 | -1.16 | VPS30 | |
| YNR045W | -1 | -1.16 | pet494 | translational activator of cytochrome c oxidase |
| YNL192W | -1 | -1.16 | CHS1 | chitin synthase 1 |
| YLL022C | -1 | -1.16 | HIF1 | |
| YKR053C | -1 | -1.16 | YSR3 | DHS-1-P phosphatase |
| YKL201C | -1 | -1.16 | mnn4 | |
| YKL012W | -1 | -1.16 | PRP40 | U1 snRNP protein |
| YHR041C | -1 | -1.16 | srb2 | RNA polymerase II holoenzyme\/mediator subunit |
| YGR029W | -1 | -1.16 | ERV1 | |
| YDL234C | -1 | -1.16 | gyp7 | GTPase-activating protein |
| YBL050W | -1 | -1.16 | SEC17 | peripheral membrane protein required for vesicular transport between ER and Golgi |
| YBL003C | -1 | -1.16 | HTA2 | Histone H2A (HTA1 and HTA2 code for nearly identical proteins) |
| YPR141C | -1 | -1.17 | kar3 | kinesin-like nuclear fusion protein |
| YPL104W | -1 | -1.17 | MSD1 | Aspartyl-tRNA synthetase, mitochondrial |
| YOR204W | -1 | -1.17 | DED1 | |
| YOL116W | -1 | -1.17 | MSN1 | 43 kDa protein, transcriptional activator |
| YLR262C | -1 | -1.17 | YPT6 | highly homologous to the human GTPase, Rab6 |
| YJL005W | -1 | -1.17 | CYR1 | adenylate cyclase |
| YER088C | -1 | -1.17 | DOT6 | |
| YDR538W | -1 | -1.17 | PAD1 | Phenylacrylic acid decarboxylase |
| YDR508C | -1 | -1.17 | GNP1 | high-affinity glutamine permease |
| YDR004W | -1 | -1.17 | rad57 | RecA homolog (similar to DMC1, RAD51, and RAD55), interacts with Rad 55p by two-hybrid analysis |
| YDL192W | -1 | -1.17 | arf1 | ADP-ribosylation factor |
| YBR218C | -1 | -1.17 | PYC2 | pyruvate carboxylase |
| YPL153C | -1 | -1.18 | rad53 | protein kinase, Mec1p and Tel1p regulate rad53p phosphorylation |
| YMR198W | -1 | -1.18 | CIK1 | spindle pole body associated protein |
| YJL196C | -1 | -1.18 | ELO1 | |
| YIR006C | -1 | -1.18 | PAN1 | |
| YDR037W | -1 | -1.18 | KRS1 | lysyl-tRNA synthetase |
| YPR162C | -1 | -1.19 | ORC4 | 56-kDa subunit of origin recognition complex (ORC) |
| YPR055W | -1 | -1.19 | SEC8 | 121 kDa component of the Exocyst complex, which is required for exocytosis, and which also contains the gene products encoded by SEC3, SEC5, SEC6, SEC10, SEC15, and EXO70 |
| YPL119C | -1 | -1.19 | DBP1 | putative ATP-dependent RNA helicase\; Dead box protein |
| YPL097W | -1 | -1.19 | MSY1 | Tyrosyl-tRNA synthetase |
| YOR209C | -1 | -1.19 | NPT1 | |
| YOL033W | -1 | -1.19 | MSE1 | Mitochondrial glutamyl-tRNA synthetase |
| YMR240C | -1 | -1.19 | CUS1 | U2 snRNP protein |
| YML061C | -1 | -1.19 | pif1 | 5' to 3' DNA helicase |
| YLL009C | -1 | -1.19 | COX17 | cysteine-rich cytoplasmic protein |
| YKR019C | -1 | -1.19 | IRS4 | |
| YJL187C | -1 | -1.19 | SWE1 | protein kinase homolog |
| YJL176C | -1 | -1.19 | SWI3 | transcription factor |
| YIR011C | -1 | -1.19 | STS1 | |
| YHR189W | -1 | -1.19 | ||
| YHR092C | -1 | -1.19 | hxt4 | High-affinity glucose transporter |
| YGR099W | -1 | -1.19 | TEL2 | telomere binding protein |
| YER169W | -1 | -1.19 | RPH1 | Repressor of PHR1 transcription\; binds to PHR1 URS |
| YDR106W | -1 | -1.19 | ARP10 | |
| YDR023W | -1 | -1.19 | ses1 | seryl-tRNA synthetase |
| YCR003W | -1 | -1.19 | MRPL32 | Mitochondrial ribosomal protein MRPL32 (YmL32) |
| YPR122W | -1 | -1.2 | AXL1 | putative homolog of human insulin-degrading endoprotease |
| YPL124W | -1 | -1.2 | NIP29 | spindle pole body associated protein |
| YKL038W | -1 | -1.2 | RGT1 | transcriptional repressor and activator |
| YIL139C | -1 | -1.2 | rev7 | subunit of DNA polymerase-zeta (Pol-zeta), an enzyme whose sole function appears to be translesion synthesis |
| YGR255C | -1 | -1.2 | COQ6 | COQ6 monooxygenase |
| YGL240W | -1 | -1.2 | DOC1 | |
| YER159C | -1 | -1.2 | BUR6 | Transcriptional regulator which functions in modulating the activity of the general transcription machinery in vivo |
| YDR362C | -1 | -1.2 | TFC6 | 91 kDa tau91 subunit of transcription factor IIIC (TFIIIC) |
| YDR353W | -1 | -1.2 | TRR1 | Thioredoxin reductase |
| YDR017C | -1 | -1.2 | kcs1 | Shows homology to basic leucine zipper family of transcription factors |
| YPR113W | -1 | -1.21 | PIS1 | phosphatidylinositol synthase |
| YPL128C | -1 | -1.21 | TBF1 | TTAGGG repeat binding factor |
| YOR180C | -1 | -1.21 | EHD2 | Peroxisomal enoyl-CoA hydratase |
| YOR092W | -1 | -1.21 | ECM3 | |
| YOR071C | -1 | -1.21 | ||
| YNR055C | -1 | -1.21 | hol1 | Putative ion transporter similar to the major facilitator superfamily of transporters |
| YNL325C | -1 | -1.21 | FIG4 | |
| YMR200W | -1 | -1.21 | ROT1 | putative membrane protein |
| YMR179W | -1 | -1.21 | spt21 | non-specific DNA binding protein |
| YLR234W | -1 | -1.21 | top3 | DNA Topoisomerase III |
| YGR112W | -1 | -1.21 | SHY1 | mitochondrial protein with homology to the mammalian SURF-1 gene |
| YDR515W | -1 | -1.21 | SLF1 | |
| YDR337W | -1 | -1.21 | MRPS28 | Mitochondrial ribosomal protein MRPS28 (E. coli S15) |
| YDL194W | -1 | -1.21 | snf3 | glucose sensor |
| YDL188C | -1 | -1.21 | pph22 | serine-threonine protein phosphatase 2A |
| YBL035C | -1 | -1.21 | POL12 | B subunit of DNA polymerase alpha-primase complex |
| YNL030W | -1 | -1.22 | HHF2 | Histone H4 (HHF1 and HHF2 code for identical proteins) |
| YML051W | -1 | -1.22 | gal80 | transcriptional regulator |
| YKL049C | -1 | -1.22 | CSE4 | high similarity to histone H3 and to human centromere protein CENP-A |
| YKL035W | -1 | -1.22 | UGP1 | Uridinephosphoglucose pyrophosphorylase |
| YKL011C | -1 | -1.22 | cce1 | cruciform cutting endonuclease |
| YJL121C | -1 | -1.22 | RPE1 | D-ribulose-5-Phosphate 3-epimerase |
| YIL010W | -1 | -1.22 | DOT5 | |
| YHR028C | -1 | -1.22 | DAP2 | Dipeptidyl aminopeptidase B (DPAP B) |
| YDR446W | -1 | -1.22 | ECM11 | |
| YOR261C | -1 | -1.23 | RPN8 | Subunit of the regulatory particle of the proteasome |
| YOR085W | -1 | -1.23 | OST3 | 34-kDa, gamma subunit of oligosaccharyl transferase glycoprotein complex |
| YNR057C | -1 | -1.23 | BIO4 | dethiobiotin synthetase |
| YMR208W | -1 | -1.23 | erg12 | mevalonate kinase |
| YKL184W | -1 | -1.23 | spe1 | Ornithine decarboxylase |
| YKL045W | -1 | -1.23 | PRI2 | p58 polypeptide of DNA primase |
| YJL099W | -1 | -1.23 | chs6 | |
| YJL054W | -1 | -1.23 | TIM54 | Translocase for the insertion of proteins into the mitochondrial inner membrane. |
| YIL116W | -1 | -1.23 | his5 | histidinol-phosphate aminotransferase |
| YHR015W | -1 | -1.23 | MIP6 | |
| YGL203C | -1 | -1.23 | kex1 | carboxypeptidase B-like processing protease |
| YGL162W | -1 | -1.23 | SUT1 | |
| YFL038C | -1 | -1.23 | YPT1 | Ras-like GTP-binding protein\; most similar to mammalian Rab1A protein |
| YER164W | -1 | -1.23 | CHD1 | transcriptional regulator |
| YDL200C | -1 | -1.23 | mgt1 | 6-O-methylguanine-DNA methylase |
| YBL066C | -1 | -1.23 | SEF1 | putative transcription factor |
| YAL001C | -1 | -1.23 | TFC3 | transcription factor tau (TFIIIC) subunit 138 |
| YOR323C | -1 | -1.24 | pro2 | gamma-glutamyl phosphate reductase |
| YOR002W | -1 | -1.24 | ALG6 | glucosyltransferase |