[Genome] Blat search using batch mode

[Kayla Smith]

Hello David,

Here is our FAQ on BLAT:
http://genome.ucsc.edu/FAQ/FAQblat

Please also see this recent mailing list question on the same topic:
https://www.soe.ucsc.edu/pipermail/genome/2008-May/016432.html

And this one:
http://www.soe.ucsc.edu/pipermail/genome/2006-November/012216.html

I hope this information helps to get you started.  Please don't hesitate 
to contact us again if you require further assistance.

Kayla Smith
UCSC Genome Bioinformatics Group

From: David L Klinkebiel
To: genome at soe.ucsc.edu
Sent: Thursday, May 29, 2008 6:50 AM
Subject: Blat search using batch mode

Is there a way of performing Blat sequence searches using the batch 
input mode. In other words if I input custom tracks into the batch 
routine can I use the table browser or something to get the possible 
Blat hits across the genome of all or fragments the custom tracks. Thanks


David Klinkebiel, Ph.D.
Department of Biochemistry and Molecular Biology
University of Nebraska Medical Center
985870 Nebraska Medical Center
Omaha, NE 68198-5870
Office Phone: 402-559-3842
Lab Phone: 402-559-9303
FAX: 402-559-6650

***The University of Nebraska Medical Center E-Mail Confidentiality
Disclaimer***
The information in this e-mail may be privileged and confidential, intended
only for the use of the addressee(s) above.
Any unauthorized use or disclosure of this information is prohibited. If you
have received this email by mistake,
please delete and immediately contact the sender.