[Genome] miRNAs and their genomic coordinates

[Ann Zweig]

Hello Noam,

	I will assume that you are interested in the most recent human assembly (hg18). 
  This assembly has an annotation track which displays C/D and H/ACA Box 
snoRNAs, scaRNAs, and microRNAs from snoRNABase and miRBase.  Using the Table 
Browser, you can filter the underlying database table (called wgRna) to show 
only the miRNAs.

	Navigate to the Table Browser tool on our website ('Tables' from the top blue 
navigation bar).

group: Genes and Gene Prediction Tracks
track: sno/miRNA
table: wgRna
region: genome
filter: (set to: type does match miRna)
output format: selected fields from primary and related tables

	Press the "get output" button.  On the next page, choose the table fields you 
would like, such as:

chrom
chromStart
chromEnd
name


	The output will be similar to the following:

#filter: wgRna.type = 'miRna'
#chrom	chromStart	chromEnd	name	type
chr1	1092346	1092441	hsa-mir-200b	miRna
chr1	1093105	1093195	hsa-mir-200a	miRna
chr1	1093105	1093195	hsa-mir-200a	miRna
chr1	1094247	1094330	hsa-mir-429	miRna


	I hope this information is helpful to you.  Please don't hesitate to contact 
the mail list again if you require further assistance.

Regards,

----------
Ann Zweig
UCSC Genome Bioinformatics Group
http://genome.ucsc.edu

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nshomron at MIT.EDU wrote:
> Hi,
> Where can I download lists of miRNAs and their genomic coordinates from the
> database?
> Cheers
> Noam
> _______________________________________________
> Genome maillist  -  Genome at soe.ucsc.edu
> http://www.soe.ucsc.edu/mailman/listinfo/genome