[Genome] refseq mapping with NCBI gene ID.

[Wishva Herath]

Hi Brooke ,
Thank you for the quick reply. I downloaded the file. However I have 
come across another problem. The picTar files list only the refseq IDs 
of the target genes. Is there a database file that I can download from 
the UCSC site that lists the NCBI gene ID of all refseqs?. Sorry for 
troubling you again.

Cheers,
Wish

Brooke Rhead wrote:
> Hello Wish,
>
> The PicTar miRNA track is available only on the hg17 (Human, May 2004) 
> assembly.  It is not available on the latest human assembly (hg18, 
> March 2006).
>
> To find the tables via the Table Browser, select:
>
> clade: Vertebrate
> genome: Human
> assembly: May 2004
> group: Expression and Regulation
> track: PicTar miRNA
> table: (there are two tables)
>     PicTar 4 Species (picTarMiRNA4Way)
>     PicTar 5 Species (picTarMiRNA5Way)
>
> There are in the downloads section here:
>
> http://hgdownload.cse.ucsc.edu/goldenPath/hg17/database/
>
> Look for the files:
> picTarMiRNA4Way.txt.gz
> picTarMiRNA5Way.txt.gz
>
> I hope this information is helpful.  If you have further questions, 
> please feel free to contact us again at genome at soe.ucsc.edu.
>
> -- 
> Brooke Rhead
> UCSC Genome Bioinformatics Group
>
>
> Subject: Downloading pictar predition data for human - question
> From: "N H M Wishva Bandara Herath" <wishva at nus.edu.sg>
> Date: Tue, 27 May 2008 00:18:21 +0800
> To: <genome at soe.ucsc.edu>
>
>
> Hi,
> I am trying to download the pictar microRNA prediction dataset (human) 
> but am unable to find the file(s) in both the table browser or the 
> downloads section. Please help.
>
> Thanks,
> Wish
>
>