[Genome] accessing data

[Brooke Rhead]

Hello Maggie,

There are two solutions to running BLAT more efficiently:

1) You can download the command-line version of BLAT and run it locally:

http://genome.ucsc.edu/FAQ/FAQblat#blat3

(BLAT is free for academic, nonprofit, and personal use.)

2) You can access our web-based BLAT with a script that obeys the usage 
limits.  There is a Perl script for this purpose available on our 
genomewiki, here:

http://genomewiki.ucsc.edu/index.php/Blat_Scripts

I hope this information is helpful.  If you have further questions, 
please feel free to contact us again and genome at soe.ucsc.edu.

--
Brooke Rhead
UCSC Genome Bioinformatics Group


Magdalena Auret wrote:
> Hi,
> 
> I am trying to blat a series of probes to test the specificity of them
> to the genome.
> 
> I have about 300 more to blat.  Is there a way to do this more
> efficiently rather than just doing 25 at a time
> 
>  
> 
> Thank you
> 
> Maggie
> 
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