[Genome] a question about a database for "A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning"

[Hiram Clawson]

Good Morning Aiihiro Mori:

Please open your WEB browser to the URL:
	http://genome.ucsc.edu/cgi-bin/hgTracks?db=ce4

And note the five tracks in the "Mapping and Sequencing Tracks"
set of controls:
"Nucleosome - Nucleosome predictions from SOLiD core alignments"
"MNase Coverage - Micrococcal nuclease control coverage"
"NSome Coverage - Coverage of nucleosome predictions from SOLiD core alignments"
"Adj NSome Covrg - Adjusted nucleosome coverage (25bp)"
"NSome Stringency - Nucleosome Positioning Stringency from SOLiD core alignments"

and one track in the "Variation and Repeats" set of controls:
"25mers - 25mers repeat annotation"

This is the C. elegans Jan 2007 WS 170 version (UCSC ce4)

--Hiram

akihiro mori wrote:
> Dear Sir/Madam
> 
> Hello, this is Akihiro Mori, and I am a grad student in Dr. Kohara lab 
> at National Institute of Genetics in Japan.
> I am writing to you regarding to a database for "A high-resolution, 
> nucleosome position map of C. elegans reveals a lack of universal 
> sequence-dictated positioning"
> which is recently published in genome research.
> 
> they generated a dataset of nucleosome position map of C. elegansthe, 
> and the article said the dataset is stored in UCSC genome browser.
> Howevere, I could not find the dataset anywhere in UCSC genome browser.
> 
> I appreciate if you can tell me where the dataset locates in UCSC genome 
> browser.
> Please let me know.
> 
> Thank you very much
> 
> Sincerely yours
> akihiro mori
> 
> _______________________________________________
> Genome maillist  -  Genome at soe.ucsc.edu
> http://www.soe.ucsc.edu/mailman/listinfo/genome
>