[Genome] Suggestion for improving the LiftOver utility

Liang, Ping Ping.Liang at roswellpark.org
Fri May 23 09:29:00 PDT 2008


Hello there!   While using the liftover utility, I got a bit frustrated
by the fact that it is not easy to establish the corresponding
relationship between the old and new positions. So just wonder if it is
possible for you to add an option to include the old positions in the
output such that one can relate between the two and be able to tell the
ones with multiple output regions. Also, it might be more convenient in
this case to include the unmapped positions in the same table and leave
the new position empty instead of placing the lists in two separate
files. If it is not easy to implement this for the web version, adding
this option to the command line version would be great.   Let me know
what you think....   Thanks. Best regards,   Ping  Liang

 

 



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