[Genome] chimp annotations of regions

[Brooke Rhead]

Hi Vesko,

Please see:
http://www.cse.ucsc.edu/pipermail/genome/2008-May/016344.html

Also, another idea is to combine information from all of the custom 
tracks discussed in the answer above and creating a single custom track 
to intersect your 100nt regions with.

One way to do this would be to get all of your custom tracks as BED 
files and changing all entries in the 'name' field for each type of 
region to reflect that type (so that all of the names in the "exon" file 
are changed to EXON, for instance).  Then you could concatenate all of 
the files together and upload it as a single custom track.

--
Brooke Rhead
UCSC Genome Bioinformatics Group


Vesselin Baev wrote:
> Dear all,
> I have coordinates of ~100nt seqs from chimp PanTro2, can I upload ( in
> TALBES)  these coordinates and get corresponding annotation element (what
> gene/intergenic/etc are part from these 100nt seqs) or flanking
> genes/elements.
> 
> 
> Vesko
>