[Genome] N-gap missing from liftAll.lft for chr8 in hg18

[Hiram Clawson]

Interesting that you should point out these too locations.
Looking at this region containing those two sequences:
	chr2:32,944,907-32,997,464
Note the repeat pattern just following the first one and
just before the second one.  This would appear to be
some kind of inverse duplication event, or some kind
of assembly problem because they are just about exactly
50 Kb apart.

--Hiram


Herve Pages wrote:
> For the isolated N's (well sometimes they are not isolated, e.g.
> chr2 has 2 N-blocks made of 1000 N's each that are not reported as
> assembly gaps, I wonder what they are), our users will be able to mask
> them or not if they want too but they'll use a different mechanism for
> this.