[Genome] chromTrf.tar.gz for mm9 contains symlinks but no data
Ann Zweig
ann at soe.ucsc.edu
Wed May 7 09:54:09 PDT 2008
Hello Herve,
Sorry about the corrupt file -- thanks for bringing it to our
attention. We have replaced it with the correct file at the same location.
Regards,
----------
Ann Zweig
UCSC Genome Bioinformatics Group
http://genome.ucsc.edu
Herve Pages wrote:
> Hi,
>
> I've downloaded the chromTrf.tar.gz file (Tandem Repeats Finder locations) for
> mm9 (the file is here: http://hgdownload.cse.ucsc.edu/goldenPath/mm9/bigZips/)
> but it contains symlinks only:
>
> hpages at lamb1:~/BSgenome_srcdata/UCSC/mm9/masks> tar ztvf chromTrf.tar.gz
> lrwxrwxrwx hiram/protein 0 2007-07-25 10:25:14 trfMaskChrom/chr1.bed -> ../trf/chr1.bed
> lrwxrwxrwx hiram/protein 0 2007-07-25 10:25:14 trfMaskChrom/chr1_random.bed ->
> ../trf/chr1_random.bed
> lrwxrwxrwx hiram/protein 0 2007-07-25 10:25:14 trfMaskChrom/chr10.bed -> ../trf/chr10.bed
> lrwxrwxrwx hiram/protein 0 2007-07-25 10:25:14 trfMaskChrom/chr11.bed -> ../trf/chr11.bed
> lrwxrwxrwx hiram/protein 0 2007-07-25 10:25:14 trfMaskChrom/chr12.bed -> ../trf/chr12.bed
> ...
> etc...
>
> so there seems to be nothing I can do with it.
> Where can I find the Tandem Repeats Finder locations for mm9?
>
> Any help would be highly apreciated. Thanks!
> H.
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