[Genome] ucsc genome browser custom track problem

[Ann Zweig]

Hello Zhaodong,

	When I create a Custom Track with the data you have provided, I can see 
it just fine in the genome browser.  One thing that may be throwing you 
off is that the location to which you open the browser by default in 
your Custom Track is on chr16 (specified by this line of your Custom Track):

browser position chr16:10000000-12000000

However, the one gene in your sample file is located on chr6 here:

chr6:29070541-29081072

So, you will not see anything in the default position on chr16, but if 
you navigate to chr6, you should see your gene displayed there.

	Please let us know if this doesn't clear it up, or if I have missed 
your point.

Regards,

----------
Ann Zweig
UCSC Genome Bioinformatics Group
http://genome.ucsc.edu

Please feel free to search the Genome mailing list archives by visiting 
our home page, clicking on "Contact Us", then typing a word or phrase 
into the search box.  On that same page 
(http://genome.ucsc.edu/contacts.html), you can subscribe to the Genome 
mailing list.



zxu wrote:
> hi,
> 
> previously, I put several custom track our webpage, today, I add a new 
> custom track like following line.
> browser position chr16:10000000-12000000
> track name="OtherGenes" description="Other Genes" visibility=pack 
> color=150,136,0
> chr6    29070541        29081072        NM_001010877    0       -       
> 29070756        29075276        0       6       
> 1801,105,561,82,168,309,        0,3948,4701,8727,9112,10222,
> 
> but when looking at genome browser, all the previous tracks are showing 
> like before, but the new Othergenes track wont show, even looking at 
> "Custom Tracks" Tab, it won't show "OtherGenes", try to figure out 
> what's wrong?
> 
> zhaodong
> 
> _______________________________________________
> Genome maillist  -  Genome at soe.ucsc.edu
> http://www.soe.ucsc.edu/mailman/listinfo/genome