[Genome] chromTrf.tar.gz for mm9 contains symlinks but no data

Herve Pages hpages at fhcrc.org
Tue May 6 20:36:54 PDT 2008


Hi,

I've downloaded the chromTrf.tar.gz file (Tandem Repeats Finder locations) for
mm9 (the file is here: http://hgdownload.cse.ucsc.edu/goldenPath/mm9/bigZips/)
but it contains symlinks only:

   hpages at lamb1:~/BSgenome_srcdata/UCSC/mm9/masks> tar ztvf chromTrf.tar.gz
   lrwxrwxrwx hiram/protein     0 2007-07-25 10:25:14 trfMaskChrom/chr1.bed -> ../trf/chr1.bed
   lrwxrwxrwx hiram/protein     0 2007-07-25 10:25:14 trfMaskChrom/chr1_random.bed -> 
../trf/chr1_random.bed
   lrwxrwxrwx hiram/protein     0 2007-07-25 10:25:14 trfMaskChrom/chr10.bed -> ../trf/chr10.bed
   lrwxrwxrwx hiram/protein     0 2007-07-25 10:25:14 trfMaskChrom/chr11.bed -> ../trf/chr11.bed
   lrwxrwxrwx hiram/protein     0 2007-07-25 10:25:14 trfMaskChrom/chr12.bed -> ../trf/chr12.bed
   ...
   etc...

so there seems to be nothing I can do with it.
Where can I find the Tandem Repeats Finder locations for mm9?

Any help would be highly apreciated. Thanks!
H.


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