[Genome] Question regarding mRNA seq

[Hiram Clawson]

Good Morning Bishwanath:

To find anything in the UCSC genome browser, simply enter the name
you want to search for in the "position" box.  Any type of name
will do.  Entering "PCSK5" in the search box indicates that
it is found in three UCSC gene locations:
	chr19:17,747,942-17,912,122
	chr19:17,635,027-17,912,122
	chr19:17,507,322-17,729,390

--Hiram

Bishwanath Chatterjee wrote:
> Hi
> I am going through the mouse genome browser to look for PCSK5 gene. This
> gene as per literature have two isoform A and B. The A isoform supposed to
> be 915 aa and B form should be 2087 aa. On This genome site it shows two
> forms one with 915 aa and other with 1485aa. The 1485 is part of the isoform
> B. But when you click one 915aa seq, it also shows you 1485.
> 
> Also now UCSC browser shifted to their own nomenclature instead of
> traditional Genbank accession. From Genbank accession, you can always go and
> find the features of the cDNA. I am not sure how to find the link or if UCSC
> browser have more details of the links from uc008gxp.1 ..
> 
> Thanks
> Bishwanath
> Bishwanath Chatterjee, Ph. D.
> Building 10 Room 6N240
> Laboratory of Developmental Biology
> National Heart Lung and Blood Institute
> National Institute of Health
> Bethesda, MD 20892
> Tel 301-451-1672
> Fax 301-480-1808
> 
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