March 2008 Archives by subject

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Starting: Mon Mar 3 05:08:19 PST 2008
Ending: Mon Mar 31 18:08:20 PDT 2008
Messages: 277

• [Genome] (no subject)   Ray Stallings
• [Genome] (no subject)   Matt Weirauch
• [Genome] 28 species alignment   Blythe, Jason
• [Genome] 28 species alignment   UCSC Genome Browser Help Desk
• [Genome] 28 species alignment   Blythe, Jason
• [Genome] 28 species alignment   Hiram Clawson
• [Genome] 28 species alignment   UCSC Genome Browser Help Desk
• [Genome] 3'utr coordinates from the table browser   Brooke Rhead
• [Genome] 30-way multiz on human   Eliot Bush
• [Genome] 30-way multiz on human   Kayla Smith
• [Genome] [BULK] Re: uncertain annotations in UCSC   Na Liu
• [Genome] [BULK] Difference for alignment segments in 17 versus 28 Vertebrate Multiz Alignment & Conservation tracks   Robert Olinski
• [Genome] [BULK] Difference for alignment segments in 17 versus 28 Vertebrate Multiz Alignment & Conservation tracks   UCSC Genome Browser Help Desk
• [Genome] [BULK] Difference for alignment segments in 17 versus 28 Vertebrate Multiz Alignment & Conservation tracks   Ann Zweig
• [Genome] [Fwd: Problem for batch download sequence!]   Brooke Rhead
• [Genome] A question on chromsome band   Mark Tong
• [Genome] A question on chromsome band   Brooke Rhead
• [Genome] A question on chromsome band   Mark Tong
• [Genome] add custom tracks   João Fadista
• [Genome] add custom tracks   Robert Kuhn
• [Genome] add custom tracks   Robert Kuhn
• [Genome] adding custom tracks   Lee, Michaela
• [Genome] adding custom tracks   Kayla Smith
• [Genome] adding custom tracks   Hiram Clawson
• [Genome] adding D. Melanogaster to the conservation list   Donovan Mann
• [Genome] adding D. Melanogaster to the conservation list   Kayla Smith
• [Genome] Affy all exon database   ravid straussman
• [Genome] Affy all exon database   Kayla Smith
• [Genome] Ammount of CpG island on promoter sequences   Carlos Plasencia
• [Genome] Ammount of CpG island on promoter sequences   Kayla Smith
• [Genome] Analysis of Multiple Genes   Keith Maccannell
• [Genome] Analysis of Multiple Genes   Ann Zweig
• [Genome] BED files and TAB's   Erwin, Ed
• [Genome] BED files and TAB's   Ann Zweig
• [Genome] BED files and TAB's   Garret Wilson
• [Genome] BED files and TAB's   Ann Zweig
• [Genome] bedIntersect program   sunlightwang
• [Genome] bedIntersect program   Brooke Rhead
• [Genome] bedIntersect program   Brooke Rhead
• [Genome] Bemused by an "invalid signed number" error in liftOver   Melissa Cline
• [Genome] Bemused by an "invalid signed number" error in liftOver   Hiram Clawson
• [Genome] BLAT Search Genome: hgc XML output?   John Woods
• [Genome] BLAT Search Genome: hgc XML output?   Hiram Clawson
• [Genome] blat: mismatch bases location   Yupu Liang
• [Genome] blat: mismatch bases location   UCSC Genome Browser Help Desk
• [Genome] blat: mismatch bases location   Yupu Liang
• [Genome] blat: mismatch bases location   UCSC Genome Browser Help Desk
• [Genome] BTAU_4.0 human protein track   Charu Gupta Kumar
• [Genome] BTAU_4.0 human protein track   Brooke Rhead
• [Genome] Bug in table browser?   Shan Yang
• [Genome] Bug in table browser?   Shan Yang
• [Genome] can blastz be used for a single fasta sequence file vs. multiple fasta sequence file?   Wang JianLi
• [Genome] can blastz be used for a single fasta sequence file vs. multiple fasta sequence file?   Brooke Rhead
• [Genome] CDT files for Acuity   Elizabeth Kahanek
• [Genome] CDT files for Acuity   Ann Zweig
• [Genome] colour affy?   Amanda Miotto
• [Genome] colour affy?   Brooke Rhead
• [Genome] colour affy?   Brooke Rhead
• [Genome] colour loci   Arthur Wright
• [Genome] colour loci   Robert Kuhn
• [Genome] colour loci   Hiram Clawson
• [Genome] colour regions using Wiggle   C.Gilissen at antrg.umcn.nl
• [Genome] colour regions using Wiggle   Hiram Clawson
• [Genome] Compile of netClass   Wang JianLi
• [Genome] Compile of netClass   Hiram Clawson
• [Genome] Concatenation of pairwise alignment   Wang JianLi
• [Genome] Concatenation of pairwise alignment   Ann Zweig
• [Genome] Converting UCSC Known Gene for GO Term analysis   Kayla Smith
• [Genome] correction of chunk coordinates in blastz alignments   Wang JianLi
• [Genome] correction of chunk coordinates in blastz alignments   Hiram Clawson
• [Genome] correction of chunk coordinates in blastz alignments   Wang JianLi
• [Genome] correction of chunk coordinates in blastz alignments   Ann Zweig
• [Genome] CpG Islands track   RS Illingworth
• [Genome] CpG Islands track   Brooke Rhead
• [Genome] custom tracks   Barb, Jennifer (NIH/CIT) [E]
• [Genome] custom tracks   Ann Zweig
• [Genome] dbSNP 128 masked flanking sequence   Jens R. Wendland
• [Genome] dbSNP 128 masked flanking sequence   Robert Kuhn
• [Genome] downloaded exons   Chris Zaleski
• [Genome] downloaded exons   Kayla Smith
• [Genome] downloaded exons   Angie Hinrichs
• [Genome] Drosophila ChIP/chip   Mark Biggin
• [Genome] Drosophila ChIP/chip   Ann Zweig
• [Genome] Drosophila ChIP/chip   Mark Biggin
• [Genome] EST orientation, multiple values   Amir Eden
• [Genome] EST orientation, multiple values   Robert Kuhn
• [Genome] Exon table   Lucia Morales
• [Genome] Exon table   Hiram Clawson
• [Genome] expression by tissue   Megan Rakoczy
• [Genome] expression by tissue   Brooke Rhead
• [Genome] Extract Promoter sequences for mouse   Zihua Hu
• [Genome] Extract Promoter sequences for mouse   Brooke Rhead
• [Genome] FASTA hg17   Daniel Siuda
• [Genome] FASTA hg17   Kayla Smith
• [Genome] finding the coding region   אסתי קומר
• [Genome] finding the coding region   Brooke Rhead
• [Genome] Foxp3   Kayla Smith
• [Genome] further questions about causes of duplicated gene   Andrew Yee
• [Genome] further questions about causes of duplicated gene   Brooke Rhead
• [Genome] Fwd: UCSC custrom track input help   lfinlan at hgu.mrc.ac.uk
• [Genome] Fwd: UCSC custrom track input help   Hiram Clawson
• [Genome] GenBank IDs   Lee, Michaela
• [Genome] GenBank IDs   Brooke Rhead
• [Genome] gene history   Juliette Aury Landas
• [Genome] gene history   UCSC Genome Browser Help Desk
• [Genome] Gene Names Conversion Files   Ahsan Huda
• [Genome] Gene Names Conversion Files   Ann Zweig
• [Genome] genome alignment   Vesselin Baev
• [Genome] genome alignment   Kayla Smith
• [Genome] genome alignment   Kayla Smith
• [Genome] genome browser   Yuan Jian
• [Genome] genome browser   Kayla Smith
• [Genome] genome browser   Yuan Jian
• [Genome] genome browser   Hiram Clawson
• [Genome] genome browser configuration for /gbdb dir   Ginger Cheng
• [Genome] genome browser configuration for /gbdb dir   UCSC Genome Browser Help Desk
• [Genome] genome-mirror at soe.ucsc.edu   Yongsheng Bai
• [Genome] genome-mirror at soe.ucsc.edu   Ann Zweig
• [Genome] genome-mysql.cse.ucsc.edu availability   Cook, Malcolm
• [Genome] genome-mysql.cse.ucsc.edu availability   Hiram Clawson
• [Genome] genome-mysql.cse.ucsc.edu availability   Hiram Clawson
• [Genome] genome-wide align   Vesselin Baev
• [Genome] GenomeInfo data file   ANH TRAN
• [Genome] GenomeInfo data file   Ann Zweig
• [Genome] genomic coordinates of transcription factors   João Fadista
• [Genome] genomic coordinates of transcription factors   Ann Zweig
• [Genome] get regions from alignment   Vesselin Baev
• [Genome] get regions from alignment   Brooke Rhead
• [Genome] get regions from alignment   Vesselin Baev
• [Genome] get regions from alignment   Ann Zweig
• [Genome] Get special sequences from UCSC browser   na liu
• [Genome] Get special sequences from UCSC browser   Kayla Smith
• [Genome] How does Liftover work?   Sven Findeiss
• [Genome] How does Liftover work?   Brooke Rhead
• [Genome] How does Liftover work?   Sven Findeiss
• [Genome] How does Liftover work?   Brooke Rhead
• [Genome] how have the altPromoter items in knownAlt been determined?   UCSC Genome Browser Help Desk
• [Genome] how have the altPromoter items in knownAlt been determined?   Brooke Rhead
• [Genome] how have the altPromoter items in knownAlt been determined?   Anton Kratz
• [Genome] how have the altPromoter items in knownAlt been determined?   Anton Kratz
• [Genome] how have the altPromoter items in knownAlt been determined?   Anton Kratz
• [Genome] how scaffold-->chrUn?   Xianjun Dong
• [Genome] how scaffold-->chrUn?   Ann Zweig
• [Genome] how scaffold-->chrUn?   Ann Zweig
• [Genome] how to obtain all the starting and ending loci of all the p and q on the 23 pairs of chromosomes ?   Ng Stanley
• [Genome] how to obtain all the starting and ending loci of all the p and q on the 23 pairs of chromosomes ?   Kayla Smith
• [Genome] human-chimp gene/utr alignment   Vesselin Baev
• [Genome] human-chimp gene/utr alignment   UCSC Genome Browser Help Desk
• [Genome] i have some problem with UCSC   yhg yhg
• [Genome] i have some problem with UCSC   UCSC Genome Browser Help Desk
• [Genome] i meet some problem with UCSC   yhg yhg
• [Genome] i meet some problem with UCSC   UCSC Genome Browser Help Desk
• [Genome] identical sequences   Lee, Michaela
• [Genome] identical sequences   Ann Zweig
• [Genome] Is the bovine genome refseq in UCSC genome browser up-to-date?   Ann Zweig
• [Genome] Is the bovine genome refseq in UCSC genome browser up-to-date?   Wen Huang
• [Genome] kent source - reading sequence quality files   Amit Indap
• [Genome] kent source - reading sequence quality files   Hiram Clawson
• [Genome] kgID   Yuan Jian
• [Genome] kgID   Robert Kuhn
• [Genome] kgID   Yuan Jian
• [Genome] knownAlt table   Yuval Nevo
• [Genome] knownAlt table   UCSC Genome Browser Help Desk
• [Genome] knownGene coding start and end   McCarthy, Shane
• [Genome] knownGene coding start and end   Brooke Rhead
• [Genome] Lift Over between different species   Meromit Schuster
• [Genome] Lift Over between different species   Kayla Smith
• [Genome] liftOver file   Gareth Wilson
• [Genome] liftOver file   Ann Zweig
• [Genome] liftOver is not working   Wang, Xuting (NIH/NIEHS) [F]
• [Genome] liftOver is not working   Brooke Rhead
• [Genome] List of vertebrate species used to build PhastCons Vertebrate Conserved Elements   Robert Olinski
• [Genome] List of vertebrate species used to build PhastCons Vertebrate Conserved Elements   UCSC Genome Browser Help Desk
• [Genome] looking for BAC libraries   Gregory Adams
• [Genome] looking for BAC libraries   Ann Zweig
• [Genome] looking for BAC libraries   Ann Zweig
• [Genome] MAFs naming   Vesselin Baev
• [Genome] Medaka polymorphism as AXT-file   Maximilian Haeussler
• [Genome] Medaka polymorphism as AXT-file   Brooke Rhead
• [Genome] Microarray track samples   Amanda Miotto
• [Genome] Microarray track samples   Brooke Rhead
• [Genome] Minor error on website   Ann Zweig
• [Genome] Minor Web LIftOver suggestion   Gordon Robertson
• [Genome] Minor Web LIftOver suggestion   Ann Zweig
• [Genome] mirBase v 10 in UCSC?   Ilan Elson-Schwab
• [Genome] mirBase v 10 in UCSC?   Fan Hsu
• [Genome] missing GNF atlas probes   Noboru Jo Sakabe
• [Genome] missing GNF atlas probes   Brooke Rhead
• [Genome] mm9 gnfatlas missing probes   Daniel Hebenstreit
• [Genome] mRNA position (bps)   Katri Kantojärvi
• [Genome] mRNA position (bps)   Kayla Smith
• [Genome] new identifiers questions   Juliette Aury Landas
• [Genome] new identifiers questions   UCSC Genome Browser Help Desk
• [Genome] nib file   Wang JianLi
• [Genome] nib file   Hiram Clawson
• [Genome] NMD+ transcripts   Micha Sammeth
• [Genome] NMD+ transcripts   Ann Zweig
• [Genome] old topic revived: multiz sequence accessibility   thereal sisterdot
• [Genome] old topic revived: multiz sequence accessibility   Kayla Smith
• [Genome] only one nt in CDS?   Yuan Jian
• [Genome] only one nt in CDS?   Hiram Clawson
• [Genome] Orangutan Quality scores   Guruprasad Ananda
• [Genome] Orangutan Quality scores   Kayla Smith
• [Genome] Output interpretation help   Gonzales-Sanchez, Ester
• [Genome] Output interpretation help   Brooke Rhead
• [Genome] parallel-synteny tables   Fungazid
• [Genome] parallel-synteny tables   Brooke Rhead
• [Genome] parallel-synteny tables   Fungazid
• [Genome] parallel-synteny tables   Ann Zweig
• [Genome] parallel-synteny tables   Fungazid
• [Genome] phylogenetic shadowing on UCSC   Vijay G. Sankaran
• [Genome] phylogenetic shadowing on UCSC   Kayla Smith
• [Genome] Problem for batch download sequence!   Jinyan Huang
• [Genome] Problem for batch download sequence!   Jinyan Huang
• [Genome] Problem for batch download sequence!   Robert Kuhn
• [Genome] problem with protein BLAT   michel weber
• [Genome] query sequence disappears from the display window   Vinay Kumar Mittal
• [Genome] query sequence disappears from the display window   Brooke Rhead
• [Genome] Question on referencing?   Klein, Christopher J., M.D.
• [Genome] Question on referencing?   Brooke Rhead
• [Genome] Questions   Brooke Rhead
• [Genome] questions about Restriction site   黄璜
• [Genome] questions about Restriction site   黄璜
• [Genome] Questions on axtNet alignments   Fuhong He
• [Genome] Questions on axtNet alignments   Hiram Clawson
• [Genome] rearding gene tables   Vinay Kumar Mittal
• [Genome] rearding gene tables   UCSC Genome Browser Help Desk
• [Genome] RefSeq UTR coordinates   Wang JianLi
• [Genome] RefSeq UTR coordinates   Hiram Clawson
• [Genome] Rep:Uploading in the GB-colour   Amanda Miotto
• [Genome] Request - WIG files can have overlapped regions   Gordon Robertson
• [Genome] Request - WIG files can have overlapped regions   Ann Zweig
• [Genome] Request - WIG files can have overlapped regions   Keith Lamont
• [Genome] request for hg18 to hg16   Gupta, Ashutosh (NIH/NCI) [F]
• [Genome] request for hg18 to hg16   Kayla Smith
• [Genome] search for long first exons   Nicole Bardehle
• [Genome] search for long first exons   Kayla Smith
• [Genome] searching in The Genome Archives maillist   Vesselin Baev
• [Genome] searching in The Genome Archives maillist   Ann Zweig
• [Genome] Segment duplication on zebrafish chr 16?   Vince Tropepe
• [Genome] Segment duplication on zebrafish chr 16?   Brooke Rhead
• [Genome] Sense/antisense genes   nham tran
• [Genome] Sense/antisense genes   Ann Zweig
• [Genome] sequences names of RefSeqs   Vesselin Baev
• [Genome] sequences names of RefSeqs   Brooke Rhead
• [Genome] sequencing gap?   Shan Yang
• [Genome] sequencing gap?   Hiram Clawson
• [Genome] shade of repeat elements?   Shan Yang
• [Genome] shade of repeat elements?   Brooke Rhead
• [Genome] SNP Strand and Contig Orientation   Xueya Zhou
• [Genome] SNP Strand and Contig Orientation   Angie Hinrichs
• [Genome] SNPs in miRNAs   Siddiqui, Shahid [BSD] - MED
• [Genome] SNPs in miRNAs   Brooke Rhead
• [Genome] Source of genomic DNA   Alex Romero
• [Genome] Source of genomic DNA   Hiram Clawson
• [Genome] Stumped   McCarthy, Kateri (NIH/NICHD) [F]
• [Genome] Stumped   Ann Zweig
• [Genome] tfbsConsSites and TRANSFAC annotation   Stefanie Figura
• [Genome] tfbsConsSites and TRANSFAC annotation   Ann Zweig
• [Genome] track line parameters   Ashish Agarwal
• [Genome] track line parameters   UCSC Genome Browser Help Desk
• [Genome] Truncated protein product names   Patrick Sullivan
• [Genome] Truncated protein product names   Robert Kuhn
• [Genome] UCSC intron   xu_jianzhen
• [Genome] UCSC intron   Ann Zweig
• [Genome] UCSC plugins for Gbrowse   Zeynep Arziman
• [Genome] UCSC plugins for Gbrowse   Ann Zweig
• [Genome] UCSC plugins for Gbrowse   Angie Hinrichs
• [Genome] uncertain annotations in UCSC   Na Liu
• [Genome] uncertain annotations in UCSC   Angie Hinrichs
• [Genome] uncertain annotations in UCSC   Angie Hinrichs
• [Genome] Uploading in the Genome browser   Amanda Miotto
• [Genome] Uploading in the Genome browser   Brooke Rhead
• [Genome] WIG file format   lukas.habegger at yale.edu
• [Genome] WIG file format   Brooke Rhead
• [Genome] Yeast nucleosome positions   Vishy Iyer
• [Genome] Yeast nucleosome positions   Ann Zweig

Last message date: Mon Mar 31 18:08:20 PDT 2008
Archived on: Mon Mar 31 18:05:27 PDT 2008

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