[Genome] tfbsConsSites and TRANSFAC annotation

[Ann Zweig]

Hello Stefanie,

	You can find this mapping in the tfbsConsFactors table.  You can 
download the entire table from the download server here:

http://hgdownload.cse.ucsc.edu/goldenPath/hg18/database/

Or, you can use the Table Browser tool to extract the information you 
need.  Find the table browser tool by pressing 'Tables' in the top blue 
navigation bar.  The two rows you will be interested in are:

tfbsConsFactors.name  (e.g. V$E47_01)
tfbsConsFactors.ac  (e.g. M00002)

	You can filter the Table Browser to only show TFBS's for humans by 
using the filter button and setting it to:

"species does match human"

	Read more about using the Table Browser here: 
http://genome.ucsc.edu/goldenPath/help/hgTablesHelp.html

	I hope this information is helpful to you.  Please don't hesitate to 
contact the mail list again if you require further assistance.

Regards,

----------
Ann Zweig
UCSC Genome Bioinformatics Group
http://genome.ucsc.edu

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Stefanie Figura wrote:
> Dear All!
> 
> Is there any file which can be downloaded to get the connection for all TRANSFAC Matrices like V$LMO2COM_02 -> M00278?? I need the M00xxx annotation, so I would be very glad if somebody can help me.
> 
> Thanks in advance!
> Best regards,
> Stefanie