[Genome] Questions on axtNet alignments

[Fuhong He]

Dear sir,

To our knowledge, the axtNet file axtNet/chr21.hg18.mm9.net.axt provides the chained and netted alignments of the best chain (hg18.mm9.all.chain.gz).  But we noticed that a chain was segmented into small axtNet alignments. What is the criteria you used to segment the chain? Is this done by netToAxt  programme?

Thank you for your any help!

Best regards!


Yours sincerely,
Fuhong