[Genome] old topic revived: multiz sequence accessibility

Kayla Smith kayla at soe.ucsc.edu
Thu Mar 6 14:36:21 PST 2008


Hello Sisterdot,

Thank you for your suggestion.  I have passed your suggestion on to our 
developers and project manager.

Meanwhile, if you have any other questions about the Genome Browser, 
please don't hesitate to contact us again.

Kayla Smith
UCSC Genome Bioinformatics Group

thereal sisterdot wrote:
> Hey all...
> 
> i know the subject has been discussed before, so i apologize for bringing it
> up again...
> 
> as already discussed there are sequences in multiz alignments, which are not
> available for browsing- applies to many of the drosophilids... they are also
> not available in the genome-test...
> 
> so the only solution for people who want to extract the whole fragments
> around the alignment seems to be to download the complete
> genomes and extract the segments they want with the methods they choose...
> 
> wouldn't it be nice to provide a genome browsing capability within UCSC for
> those only partially represented genomes- even if there is no annotation
> associated with them (besides the already available- e.g. multiz )...
> 
> thanx
> sisterdot
> _______________________________________________
> Genome maillist  -  Genome at soe.ucsc.edu
> http://www.soe.ucsc.edu/mailman/listinfo/genome



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