[Genome] can blastz be used for a single fasta sequence file vs. multiple fasta sequence file?

[Brooke Rhead]

Hello JL,

You are correct, blastz does not work with MAF input.  You can use 
multiz instead.

--
Brooke Rhead
UCSC Genome Bioinformatics Group


Wang JianLi wrote:
> 
> Dear all,
> 

> I am not sure if blastz could be used for a single fasta sequence
> file vs. a multiple fasta sequence file. Because when I use lav2maf, I found
the fasta headers from the multiple fasta sequence file were not
recognized and in the maf file, all the fasta sequences end up with the
same name.

> Thanks.
>  
> Regards,
> JL
> 
> Note: This message may contain confidential information. If this
> email has been sent to you by mistakes, please notify the sender and delete it
immediately. Thank you.
> 
> _______________________________________________
> Genome maillist  -  Genome at soe.ucsc.edu
> http://www.soe.ucsc.edu/mailman/listinfo/genome