[Genome] Output interpretation help

[Brooke Rhead]

Hello Ester,

For help learning how to use the Genome Browser, please see the online 
tutorials and training materials on the Open Helix web site:

http://www.openhelix.com/downloads/ucsc/ucsc_home.shtml

Additionally, please see our user's guide, here:

http://genome.ucsc.edu/goldenPath/help/hgTracksHelp.html

and our frequently asked questions page:

http://genome.ucsc.edu/FAQ/

The materials at these links should help you get started using the 
Genome Browser.  If you still have questions, please feel free to 
contact us again at the genome mailing list address.

--
Brooke Rhead
UCSC Genome Bioinformatics Group


Gonzales-Sanchez, Ester wrote:
> Dear Webmaster.
> I need some help to be able to interpret the output of UCSC.I do not
understand the output very well.
> I have added the output of the molecule sequence I am interested
in.How can I comment and interpret this output?.Adhesion molecule , Icam-1.
> TWhat to bars and arrows means ?Blue,green,red and black colours.How
can I interepret SNPs?
>  position/search   size 14,382 bp.  
> 	
>  <http://genome.ucsc.edu/trash/hgtIdeo/hgtIdeo_genome_60b0_d89c20.gif> 	
> 	
>  <http://genome.ucsc.edu/trash/hgt/hgt_genome_60b0_d89c40.gif> 
> 
> move start
> 	 Click on a feature for details. Click on base position to zoom in around cursor. Click gray/blue	
> 
>> ref|NC_000019.8|NC_000019:10237779-10242779 Homo sapiens chromosome 19, reference assembly, complete sequence
> 
> GTCTCGAACTCCTGACCTCAGGTGATTCTCCTGCCTTGGCCTCCCAAAGTGCTGAGATTACAGGTGTGAG
> 
> CCACTGCACACGGCCTTAAATTTTATTTATTATTTATTTATTTATTTATTTAGAGACTTAGTCTCACTCT
> 
> GTTGCCCAGGCTGGAGTGCAGTGGCATGGTCTCGGCTCACTGCACTCCACCTCCTGGGTTCACGCCATTC
> 
> TCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCCACCACCACTCCCGGCTAATTTTTGTATTT
> 
> TTAGTAGAGATGGGGTTTCACTGTGTTAGCCAGGATAGTCTCGATCTCCTGACCTCGTGATCCGCCTGCC
> 
> TCGGCCTCCCAAAGTGCTGGGATTACTTATTTTGTTTTTTGTAGAGACAGGTTCTCACTGTGTTGCCCAG
> 
> GCTGGTCTTGAACTCCTGATCTCAAGTGATCTTCCCACCTCAGTCTCTCAAAGGGCTGGGATTACAGGGG
> 
> TGAGCCACTGCACCCCACCTTCCCTCTACTTTTTGACGGTTTCCTTCTGCTATGAATGTGCATGTCCAGT
> 
> TGTCTGCTTCTTAGAACTGATATTTACCTTCCTCATCCATCAGCCATTGGAGGAGGACTGGGACCGCTCA
> 
> GATTATTGATCTGACCCATTCTTTCGGCAGGGTTTCCTGGTGGCTGTCTTCCATCACCAAAACTGGAATC
> 
> AGAAGAGTTTCCATAGCCCTTTTTTTTTCCCCACATCTTTGCTGAAGCAGAGTTTTGAAAAACAAAACCA
> 
> CAAACTAAGCTATTCCCCAGAAGAAATCTGTAATCAAAGATAAGCTCTGCCGGGCACAGTGGCTCACGCC
> 
> TTTTGGAGGCCAAGGCGGGCGGATCACCTGAGGTCAGGAGTTCTAGACCTGCCAGGCCAACATGGTAAAA
> 
> CCTCATCTCTACTAAAAATACAAAAATTAGCTAGATGTGGTGGTGGGTACCTGTAGTCTCAGCTACCTGG
> 
> GAGGCTGAGGCAAGAGAATCGCTTGAACCTGGGAAGTAGAGGTTGCAGTGAGCCGAGATTGCACCACTGC
> 
> ACTCCAGCCTGGGCGACGGAGTGAGACGACCTCACAAAAATTTACATAAATAAAATGAAAAGTAAAATAA
> 
> AAATACAAAAGTTGGCCGGGTGCGTTTGCTCACGCCTGTAATCCCAGCACTTTGGGAGGGTGAGGCAGGC
> 
> AGATAATGAGGTAAGAAGATCGAGACCATCCTGGCTAACACGGTGAAACCCTGTCTCTACTAAAAATACA
> 
> AAAAATTAGCTGTGCGTGGTGACACGCACCTGTAGTCCCAGCTATTTGGGAGGCTGAGGCAGGAGAATCA
> 
> CTTGAACCTGGGAGGTGGAGGTTGCAGTGAGCCGAGATCGCACCACTGCACTCCAGCCTGGGCCACAGAG
> 
> TGAGACTCCATCTTGAAAAAAAAAAAAAATACAAAAGTTAGCCAGGGGTGTTGGTGGGTGCCTGTAATCC
> 
> CAGCTATTTGGGAGGCTAAGGCAGAAGAATTTCTTGAACCTAGGAAACGGAGGTTGCAGTGAGCCGAGAT
> 
> CACACCTCTGTACTCCAGCCTGGACAACAGAGCGAGACTTTGTCTCAAAAAAAAAAAAAAAAAAAAAACT
> 
> AAATAGGCCGGGAGCAGTGGCTCATGCCTATAATCCCAGCCCTTTGGGAGGCCAAGGCAGGTGGATCACT
> 
> TGAGGTCAGGAGTTTGAGACCAGGCTGGCCAACATGGTGTAACCCCGTCTCTACTAAAAACACAAAAATT
> 
> AGCCGGGTCTGGTGGCGTATGTCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCACTTAAAC
> 
> CTGGGAGGCAGGGGTTGCAGTGAGCTGAGATCGTGCCACTGCACTCTAGCCAGGGTGACAGAGTGAAACT
> 
> CTGTCTCAAAAAATTAAAAAAGAAATTCAGCAAGTAATGAGTTAAGGAATTCGAATATTAAGGCGAGTGA
> 
> CAAGGAACGCCCAGGATGTGGCCCAGGATGGAGTAGGGGGGACACTCATTTAGGAGAAAGCTCAGGCCAC
> 
> AAGACAGGAGGAGCCAGCCTTGTTGGGGTTGAAGGGAAGAGCATTCCAGGCTGAGGGAACTGCAAGGCGT
> 
> TTGCATGGGACACTATGGGATGGCTTCTGCCCTTGGTGGGCAGCCTCTGGTCTGAGGCCATTCTTTGGCC
> 
> TCTTGAACTCCTGGGCTCAAGTGATCCTCCCATCTCGGCCTCCCAAAATGCTGGGATTACAGGTGGGAGC
> 
> CGCGCCCAGGTGGATTTTTGTCTGACTCTGTTCATTCCTGTGTCCCCAGTACCTGGAAGGACGCCAAGCA
> 
>  
> 
> 
> This email has been scanned for all viruses by the MessageLabs Email
> Security System.
> _______________________________________________
> Genome maillist  -  Genome at soe.ucsc.edu
> http://www.soe.ucsc.edu/mailman/listinfo/genome